A Cellular Regulatory Network-Aware Transcriptomics Foundation Model
☆38Dec 18, 2025Updated 8 months ago
Alternatives and similar repositories for GREmLN
Users that are interested in GREmLN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆32Jan 22, 2025Updated last year
- ☆17Jan 30, 2026Updated 7 months ago
- VariantFormer: A hierarchical transformer integrating DNA sequences with genetic variations☆32May 3, 2026Updated 4 months ago
- cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.☆56Dec 19, 2025Updated 8 months ago
- Codebase for training the SubCell models☆24Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MaxToki: an autoregressive single-cell language model built on BioNeMo/NeMo/Megatron.☆28Jul 28, 2026Updated last month
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆38Mar 1, 2026Updated 6 months ago
- ☆159Nov 6, 2025Updated 9 months ago
- Official Implementation of the paper "Variational Control for Guidance in Diffusion Models" accepted at ICML'25☆20Dec 5, 2025Updated 8 months ago
- Public repo for rbio, a biologically-informed reasoning model trained on virtual cell models as verifiers☆145Nov 24, 2025Updated 9 months ago
- ☆20Jun 12, 2026Updated 2 months ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆47May 27, 2026Updated 3 months ago
- A repository for reproducing experiments from the TxPert paper☆47Mar 25, 2026Updated 5 months ago
- Code for "Foundation Models Improve Perturbation Response Prediction"☆29Apr 16, 2026Updated 4 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆23Apr 30, 2025Updated last year
- single-cell latent diffusion model☆63Updated this week
- parallel differential expression for single-cell perturbation sequencing☆29Aug 26, 2026Updated last week
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Mar 26, 2026Updated 5 months ago
- Evaluation framework for computationally inferred gene networks from single-cell data.☆19Oct 23, 2025Updated 10 months ago
- Data files for the main dysts repository☆22Sep 23, 2025Updated 11 months ago
- Large language model Mistral for DNA☆25Sep 12, 2025Updated 11 months ago
- ☆24Jun 14, 2025Updated last year
- ☆53Jun 16, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆26Updated this week
- ☆18Apr 23, 2026Updated 4 months ago
- Official repo for BWLer: Barycentric Weight Layer☆31Aug 11, 2026Updated 3 weeks ago
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Updated this week
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆29Feb 21, 2023Updated 3 years ago
- Tahoe-x1 is a single cell foundation model designed for gigascale datasets☆163Aug 25, 2026Updated last week
- tension inference for epithelial cells☆20Nov 6, 2023Updated 2 years ago
- Benchmarking gene embeddings on single, paired, and gene set tasks☆23Nov 29, 2025Updated 9 months ago
- pytorch dataloaders for single-cell perturbation data☆51Jul 18, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆36Mar 19, 2025Updated last year
- ☆14Feb 19, 2024Updated 2 years ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆665Jul 24, 2026Updated last month
- "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…☆19Feb 5, 2023Updated 3 years ago
- Stack is a single-cell foundation model that enables in-context learning at inference time.☆157Apr 28, 2026Updated 4 months ago
- Fast semantic search for biorXiv manuscripts☆12Feb 16, 2025Updated last year
- Repository for Ruff, King et al. Molecular grammars of predicted intrinsically disordered regions that span the human proteome☆19Dec 29, 2025Updated 8 months ago