Alternatives and similar repositories for GREmLN

Users that are interested in GREmLN are comparing it to the libraries listed below

• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆35Updated 2 months ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆54Updated last week
• theislab / scTab
  ☆61Updated last year
• mostafavilabuw / EnformerAssessment
  ☆25Updated last year
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆56Updated last week
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer link prediction
  ☆42Updated 2 months ago
• sfortma2 / scranPY
  A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing
  ☆35Updated 2 years ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆50Updated 10 months ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆33Updated 2 months ago
• rajewsky-lab / spacemake
  ☆48Updated this week
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆66Updated 5 months ago
• gagneurlab / scooby
  scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.
  ☆48Updated last month
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆73Updated 6 months ago
• shuxiaoc / maxfuse
  ☆56Updated last year
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆114Updated last week
• ajaynadig / TRADEtools
  ☆33Updated 9 months ago
• aertslab / CREsted
  CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…
  ☆52Updated last week
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆50Updated 7 months ago
• KANG-BIOINFO / CellDrift
  CellDrift: temporal perturbation effects for single cell data
  ☆13Updated 3 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆71Updated 2 years ago
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆31Updated last month
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆29Updated last week
• nceglia / genevector
  Vector representations of gene co-expression in single cell RNAseq.
  ☆36Updated last month
• scverse / spatialdata-notebooks
  ☆62Updated last week
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆62Updated 3 months ago
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆66Updated last month
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆123Updated 2 weeks ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆27Updated 11 months ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆95Updated last year