csb-toolbox / CSBLinks
A Python framework for structural bioinformatics.
☆13Updated last year
Alternatives and similar repositories for CSB
Users that are interested in CSB are comparing it to the libraries listed below
Sorting:
- Vector graphics cartoons from protein structure☆56Updated 3 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Comprehensive Python client for the Uniprot REST API☆54Updated 2 months ago
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated last year
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Updated 6 years ago
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆21Updated last year
- Python Client Library for the G2P Portal API☆15Updated 4 months ago
- ☆17Updated 9 months ago
- Chromosome polymer simulations and in silico capture experiments☆53Updated last month
- Fast protein domain structure embedding+search tool☆27Updated 3 months ago
- A platform to do RNA science☆27Updated 4 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- Template-based RNA secondary structure visualization☆26Updated last year
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆22Updated 7 months ago
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆21Updated 7 years ago
- Scripts to generate and analyze afdb clusters☆11Updated 2 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated last month
- A Python platform for Structural Bioinformatics☆58Updated 9 months ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆37Updated 3 months ago
- Python framework for doing ancestral sequence reconstruction☆42Updated last year
- Diverse Genomic Embedding Benchmark☆50Updated 3 months ago
- Evolutionary conservation estimation of residues or nucleotides☆56Updated 3 years ago
- ☆16Updated last month
- ☆13Updated last year
- An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…☆16Updated 7 years ago
- ☆26Updated 3 years ago
- ☆15Updated 9 years ago
- Code for LazyAF pipeline☆21Updated last year
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆17Updated last year