Alternatives and similar repositories for amoebae

Users that are interested in amoebae are comparing it to the libraries listed below

• clemgoub / TE-Aid
  Annotation helper tool for the manual curation of transposable element consensus sequences
  ☆48Updated 3 months ago
• gatech-genemark / GeneMark-ETP
  GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology
  ☆22Updated last month
• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆30Updated 6 years ago
• epi2me-labs / wf-16s
  ☆30Updated last month
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆78Updated last month
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆57Updated last year
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆76Updated this week
• bcgsc / LongStitch
  Correct and scaffold assemblies using long reads
  ☆54Updated last year
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆65Updated last week
• rderelle / Broccoli
  orthology assignment using phylogenetic and network analyses
  ☆45Updated 3 months ago
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆68Updated 3 months ago
• Gaius-Augustus / learnMSA
  Learning and Aligning Large Protein Families with support of protein language models.
  ☆25Updated 3 weeks ago
• MatteoSchiavinato / all2vcf
  Toolkit to convert the output of common variant calling programs to VCF
  ☆23Updated 2 years ago
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆34Updated this week
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆86Updated 2 years ago
• epi2me-labs / wf-amplicon
  ☆35Updated last month
• NBISweden / aMeta
  Ancient microbiome snakemake workflow
  ☆24Updated last month
• aljpetri / isONform
  De novo construction of isoforms from long-read data
  ☆28Updated 6 months ago
• lh3 / jstreeview
  Interactive phylogenetic tree viewer/editor
  ☆47Updated last year
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated last year
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆39Updated 3 months ago
• dubssieg / pancat
  Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
  ☆34Updated 3 weeks ago
• epi2me-labs / wf-bacterial-genomes
  Small variant calling for haploid samples
  ☆38Updated last month
• PacificBiosciences / pbAA
  ☆24Updated 3 months ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆66Updated 2 years ago
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆85Updated last month
• epi2me-labs / wf-alignment
  ☆28Updated 3 weeks ago
• mobinasri / flagger
  Evaluating genome assemblies
  ☆97Updated 2 weeks ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆59Updated 3 months ago
• estebanpw / chromeister
  A dotplot generator for large chromosomes
  ☆42Updated last year