Alternatives and similar repositories for amoebae

Users that are interested in amoebae are comparing it to the libraries listed below

• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆32Updated 6 years ago
• NBISweden / aMeta
  Ancient microbiome snakemake workflow
  ☆25Updated 5 months ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated last year
• MBaysanLab / vcf-observer
  VCF Observer is a VCF file analysis, comparison, and visualization tool.
  ☆18Updated 8 months ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆83Updated this week
• tao-bioinfo / PrimerServer2
  PrimerServer2: a high-throughput primer design and specificity-checking platform
  ☆79Updated 2 years ago
• DrMicrobit / mira
  MIRA sequence assembler
  ☆28Updated 8 months ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆86Updated 2 years ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆60Updated last year
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆28Updated last week
• peterthorpe5 / public_scripts
  collection of bioinformatic scripts
  ☆31Updated last year
• pbfrandsen / insect_genome_assemblies
  scripts used to download and analyze insect assemblies from GenBank
  ☆15Updated 4 years ago
• pauloluniyi / VGEA
  VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.
  ☆20Updated 4 years ago
• clemgoub / TE-Aid
  Annotation helper tool for the manual curation of transposable element consensus sequences
  ☆50Updated 6 months ago
• csoderlund / SyMAP
  Synteny Mapping and Analysis Program
  ☆27Updated last week
• CAMI-challenge / AMBER
  AMBER: Assessment of Metagenome BinnERs
  ☆31Updated 8 months ago
• MatteoSchiavinato / all2vcf
  Toolkit to convert the output of common variant calling programs to VCF
  ☆23Updated 2 years ago
• slt666666 / NLRtracker
  NLR annotation tool
  ☆33Updated last year
• epi2me-labs / wf-bacterial-genomes
  Small variant calling for haploid samples
  ☆43Updated 3 weeks ago
• JLSteenwyk / ClipKIT
  a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
  ☆79Updated this week
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆62Updated 4 months ago
• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆50Updated 5 months ago
• RKMlab / perf
  PERF is an Exhaustive Repeat Finder
  ☆34Updated 4 years ago
• happykhan / BRIG
  BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…
  ☆36Updated 6 years ago
• alvesrco / pipecov
  This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the …
  ☆14Updated 2 years ago
• GenomicsAotearoa / Kakapo
  Scripts and code for Kākāpō genomic data
  ☆14Updated 2 years ago
• sagnikbanerjee15 / Finder
  A fully automated gene annotator from RNA-Seq expression data
  ☆60Updated 2 years ago
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆52Updated 9 months ago
• aakechin / NGS-PrimerPlex
  NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design
  ☆61Updated 4 months ago
• gatech-genemark / GeneMark-ETP
  GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology
  ☆24Updated 5 months ago