Alternatives and similar repositories for amoebae:

Users that are interested in amoebae are comparing it to the libraries listed below

• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆30Updated 5 years ago
• epi2me-labs / wf-bacterial-genomes
  Small variant calling for haploid samples
  ☆28Updated 2 weeks ago
• epi2me-labs / wf-16s
  ☆26Updated last month
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆56Updated last year
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆64Updated 10 months ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆36Updated this week
• FredHutch / gig-map
  Build a map of genes present across a set of microbial genomes
  ☆13Updated last week
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆63Updated this week
• CAMI-challenge / AMBER
  AMBER: Assessment of Metagenome BinnERs
  ☆28Updated this week
• clemgoub / TE-Aid
  Annotation helper tool for the manual curation of transposable element consensus sequences
  ☆46Updated 7 months ago
• aleimba / bac-genomics-scripts
  Collection of scripts for bacterial genomics
  ☆44Updated 5 years ago
• WatsonLab / KOunt
  Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.
  ☆24Updated 3 months ago
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆69Updated 2 months ago
• gatech-genemark / GeneMark-ETP
  GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology
  ☆20Updated 8 months ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆54Updated 2 weeks ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆73Updated last year
• Nextomics / NextPolish2
  Repeat-aware polishing genomes assembled using HiFi long reads
  ☆76Updated 2 months ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆81Updated 2 years ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆69Updated last month
• tolkit / telomeric-identifier
  Identify and find telomeres, or telomeric repeats in a genome.
  ☆114Updated 3 months ago
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆24Updated last week
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆113Updated this week
• jonathancrabtree / Circleator
  Flexible circular visualization of genome-associated data with BioPerl and SVG.
  ☆47Updated 5 years ago
• rderelle / Broccoli
  orthology assignment using phylogenetic and network analyses
  ☆46Updated 3 months ago
• khyox / recentrifuge
  Recentrifuge: robust comparative analysis and contamination removal for metagenomics
  ☆88Updated 3 months ago
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆91Updated this week
• nf-core / pangenome
  Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
  ☆80Updated this week
• Gaius-Augustus / learnMSA
  Learning and Aligning Large Protein Families with support of protein language models.
  ☆19Updated last week
• filip-husnik / pseudofinder
  Detection of pseudogene candidates in bacterial and archaeal genomes.
  ☆45Updated 9 months ago
• evolgeniusteam / EvolviewDocumentation
  Documentation for Evolview
  ☆26Updated 3 years ago