kyu999 / ssw_alignerLinks
Python implementation of Striped Smith-Waterman Algorithm
☆24Updated last year
Alternatives and similar repositories for ssw_aligner
Users that are interested in ssw_aligner are comparing it to the libraries listed below
Sorting:
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆39Updated last year
- ☆55Updated 5 years ago
- Fast & accurate alignment of barcoded short-reads☆32Updated 2 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆29Updated 4 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- A Python library for reading and writing PacBio® data files☆41Updated 2 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- RNA-Seq Mutation Detection☆28Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- ☆49Updated last year
- 10x Genomics Reads Simulator☆46Updated last year
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 3 years ago
- ☆51Updated 6 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Updated 8 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Efficiently read and write sequencing data from Python☆68Updated 2 months ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated last year
- Assembly Based ReAligner☆74Updated 7 years ago
- ☆49Updated 2 years ago
- GEM-Mapper v3☆58Updated 2 weeks ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆57Updated 9 months ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 6 years ago