Alternatives and similar repositories for LocARNA

Users that are interested in LocARNA are comparing it to the libraries listed below

• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆115Updated 11 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 3 years ago
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆94Updated 3 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆148Updated 2 weeks ago
• Weeks-UNC / shapemapper2
  Public repository for ShapeMapper 2 releases
  ☆39Updated 10 months ago
• m-jahn / genome-scale-models
  Genome scale metabolic models in SBML format
  ☆10Updated 3 years ago
• LJI-Bioinformatics / Excel-Reverse-Complement
  A simple add-in for Excel supplying functions to calculate the reverse, complement, and reverse-complement of a nucleotide sequence
  ☆45Updated 3 years ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆161Updated last year
• ialbert / bio
  Making bioinformatics fun again
  ☆74Updated 2 weeks ago
• bxlab / bx-python
  Tools for manipulating biological data, particularly multiple sequence alignments
  ☆158Updated this week
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆175Updated last month
• neufeld / pandaseq
  PAired-eND Assembler for DNA sequences
  ☆137Updated 4 years ago
• simon-anders / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆128Updated 5 years ago
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆384Updated 4 months ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆80Updated 2 years ago
• Illumina / PrimateAI
  deep residual neural network for classifying the pathogenicity of missense mutations.
  ☆115Updated 4 years ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆152Updated 5 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆42Updated last week
• Ensembl / VEP_plugins
  Plugins for the Ensembl Variant Effect Predictor (VEP)
  ☆159Updated last month
• KatyBrown / CIAlign
  ☆132Updated last year
• ANHIG / IMGTHLA
  Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
  ☆242Updated 3 weeks ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆133Updated 3 months ago
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆117Updated 3 months ago
• arvestad / alv
  A console-based alignment viewer
  ☆116Updated 4 months ago
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆114Updated last week
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆245Updated 3 months ago
• gear-genomics / tracy
  Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
  ☆118Updated last week
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆121Updated 8 months ago
• skrakau / PureCLIP
  Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
  ☆32Updated 4 years ago
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆191Updated last week