Alternatives and similar repositories for LocARNA:

Users that are interested in LocARNA are comparing it to the libraries listed below

• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆107Updated 5 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆69Updated 3 years ago
• Weeks-UNC / shapemapper2
  Public repository for ShapeMapper 2 releases
  ☆34Updated 4 months ago
• BackofenLab / IntaRNA
  Efficient target prediction incorporating accessibility of interaction sites
  ☆48Updated 2 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆38Updated 3 weeks ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆54Updated last year
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆59Updated 4 years ago
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆13Updated 5 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated last month
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆114Updated 3 weeks ago
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆90Updated 2 years ago
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆80Updated 2 years ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆154Updated 6 months ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆44Updated last month
• BackofenLab / GraphClust-2
  A pipeline for structural clustering of RNA secondary structures
  ☆15Updated 4 years ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆106Updated 10 months ago
• KatyBrown / CIAlign
  ☆125Updated 7 months ago
• ialbert / bio
  Making bioinformatics fun again
  ☆69Updated 10 months ago
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆51Updated 2 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆90Updated 3 years ago
• sebriois / biomart
  Python biomart API
  ☆65Updated last year
• arvestad / alv
  A console-based alignment viewer
  ☆109Updated last month
• tkzeng / Pangolin
  Pangolin is a deep-learning method for predicting splice site strengths.
  ☆73Updated 10 months ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆77Updated last year
• maximilianh / crisporWebsite
  All source code of the crispor.org website
  ☆75Updated 3 months ago
• FASTAptamer / FASTAptamer
  FASTAptamer: A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections
  ☆10Updated 6 months ago
• phageghost / python-genome-browser
  Tools for making plots of genomic datasets in a genome-browser-like format
  ☆32Updated 4 months ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆149Updated 2 months ago
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆215Updated 9 months ago
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆121Updated 3 weeks ago