Alignment of RNAs
☆27Jul 31, 2024Updated 2 years ago
Alternatives and similar repositories for LocARNA
Users that are interested in LocARNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficient target prediction incorporating accessibility of interaction sites☆60Updated this week
- The ViennaRNA Package☆439Updated this week
- Galaxy RNA workbench☆41Oct 10, 2020Updated 6 years ago
- A pipeline for structural clustering of RNA secondary structures☆15Apr 21, 2021Updated 5 years ago
- RNA secondary structure/sequence profiles for homology search and alignment☆136Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- RNA editing quantification in deep transcriptome data☆16Jul 17, 2025Updated last year
- ☆17Jun 22, 2024Updated 2 years ago
- Galaxy Tool wrappers☆125Updated this week
- Graph Grammar Library☆29Jul 7, 2017Updated 9 years ago
- CapR calculates probabilities that each RNA base position is located within each secondary structural context for long RNA sequences.☆10Oct 10, 2020Updated 6 years ago
- A small collection of useful tutorials and links☆15Apr 13, 2024Updated 2 years ago
- Explicit Decomposition with Neighborhoods python version☆45Jun 17, 2024Updated 2 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆21Jul 19, 2018Updated 8 years ago
- ☆20Oct 18, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Complete analysis pipeline for PAR-CLIP data☆10May 7, 2015Updated 11 years ago
- ☆19May 5, 2020Updated 6 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆106May 23, 2025Updated last year
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- SSR: A Unifed Framework for Prediction in Secondary Structure of RNA. 整合了LinearFold, E2Efold, MXfold2算法，包含数据集，欢迎一键使用。☆10Dec 31, 2021Updated 4 years ago
- A Foundation Language Model For Multilayer Regulation of RNA☆22Nov 30, 2025Updated 11 months ago
- RNAz - predicting structural noncoding RNAs☆14Oct 21, 2019Updated 7 years ago
- Cluster Evaluation R package (ClueR) for detecting key signaling events from time-series phosphoproteomics data☆11Jan 10, 2024Updated 2 years ago
- RNA Structural Covariation Above Phylogenetic Expectation☆25Oct 21, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆41Mar 21, 2026Updated 7 months ago
- Convenience functions for VMD-TCL scripting☆14Apr 3, 2026Updated 6 months ago
- ☆11Aug 2, 2024Updated 2 years ago
- Create force-directed graphs of RNA secondary structures.☆115Jun 6, 2020Updated 6 years ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Aug 28, 2026Updated 2 months ago
- ☆10Dec 12, 2017Updated 8 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆71Jun 16, 2026Updated 4 months ago
- Golang VNC screenshot utility☆13Feb 19, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraints☆10Jul 29, 2024Updated 2 years ago
- Accelerate Molecular Biology Research with Machine Learning☆57Oct 24, 2026Updated last week
- A whole-genome reference database of soil bacteria, fungi, and archaea☆14Jun 19, 2026Updated 4 months ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆13Jul 11, 2026Updated 3 months ago
- R CRAN package `diptest` : Hartigan's diptest for unimodality (including p-values)☆11Aug 19, 2025Updated last year
- An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…☆16Jul 20, 2018Updated 8 years ago
- A Python library containing RNA-related bioinformatics functions and classes.☆24Oct 22, 2026Updated last week