Alignment of RNAs
☆28Jul 31, 2024Updated last year
Alternatives and similar repositories for LocARNA
Users that are interested in LocARNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNAlien - unsupervised RNA family model construction☆13Jun 8, 2021Updated 5 years ago
- Efficient target prediction incorporating accessibility of interaction sites☆54Feb 23, 2026Updated 3 months ago
- New version of JACUSA -> 2.0☆32Jun 2, 2026Updated last week
- Galaxy RNA workbench☆41Oct 10, 2020Updated 5 years ago
- A pipeline for structural clustering of RNA secondary structures☆15Apr 21, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- RNA editing quantification in deep transcriptome data☆16Jul 17, 2025Updated 10 months ago
- Galaxy Tool wrappers☆123Updated this week
- Graph Grammar Library☆28Jul 7, 2017Updated 8 years ago
- RNA secondary structure/sequence profiles for homology search and alignment☆129Jun 1, 2026Updated last week
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Nov 11, 2022Updated 3 years ago
- Explicit Decomposition with Neighborhoods python version☆45Jun 17, 2024Updated last year
- GraphProt: modelling binding preferences of RNA-binding proteins☆20Jul 19, 2018Updated 7 years ago
- A small collection of useful tutorials and links☆15Apr 13, 2024Updated 2 years ago
- ☆18May 5, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Complete analysis pipeline for PAR-CLIP data☆10May 7, 2015Updated 11 years ago
- Convenience functions for VMD-TCL scripting☆14Apr 3, 2026Updated 2 months ago
- A Perl/R pipeline for plotting metagenes☆38Mar 21, 2026Updated 2 months ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- SSR: A Unifed Framework for Prediction in Secondary Structure of RNA. 整合了LinearFold, E2Efold, MXfold2算法,包含数据集,欢迎一键使用。☆10Dec 31, 2021Updated 4 years ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆186Apr 8, 2026Updated 2 months ago
- Degenerate Codon Design☆13Feb 13, 2020Updated 6 years ago
- A software research tool for the analysis of structural communication in protein ensembles☆14Mar 24, 2022Updated 4 years ago
- Simulation code for the prediction of RNA structures.☆14Jan 21, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆14Jul 28, 2023Updated 2 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- Sample and predict coarse grain 3D RNA structures☆10Feb 12, 2024Updated 2 years ago
- RNA Structural Covariation Above Phylogenetic Expectation☆19May 30, 2026Updated last week
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107May 23, 2025Updated last year
- ☆10Dec 12, 2017Updated 8 years ago
- Code repository of "Deep generative design of RNA family sequences"☆42Apr 8, 2026Updated 2 months ago
- MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis☆12May 19, 2026Updated 3 weeks ago
- ☆11Aug 2, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A nextflow pipeline for performing bacterial RNA-Seq data analysis.☆13Apr 26, 2026Updated last month
- An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…☆16Jul 20, 2018Updated 7 years ago
- DOM Text Based Multiple Sequence Alignment Library☆20Jul 9, 2019Updated 6 years ago
- 基于词典的正向最大匹配分词算法和基于词典的逆向最大匹配分词算法☆13Dec 12, 2017Updated 8 years ago
- Octree is a shallow tree structure for 3-dimensional points☆20Jul 22, 2020Updated 5 years ago
- ☆12May 14, 2026Updated 3 weeks ago
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆35May 14, 2026Updated 3 weeks ago