Alignment of RNAs
☆25Jul 31, 2024Updated last year
Alternatives and similar repositories for LocARNA
Users that are interested in LocARNA are comparing it to the libraries listed below
Sorting:
- Efficient target prediction incorporating accessibility of interaction sites☆51Feb 23, 2026Updated 3 weeks ago
- The ViennaRNA Package☆389Feb 24, 2026Updated 3 weeks ago
- New version of JACUSA -> 2.0☆31Mar 6, 2026Updated 2 weeks ago
- A pipeline for structural clustering of RNA secondary structures☆15Apr 21, 2021Updated 4 years ago
- RNA editing quantification in deep transcriptome data☆16Jul 17, 2025Updated 8 months ago
- Galaxy Tool wrappers☆122Updated this week
- Dockerfiles to build Galaxy images☆24Aug 22, 2023Updated 2 years ago
- Graph Grammar Library☆26Jul 7, 2017Updated 8 years ago
- RNA secondary structure/sequence profiles for homology search and alignment☆128Mar 13, 2026Updated last week
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Nov 11, 2022Updated 3 years ago
- ☆19Oct 18, 2024Updated last year
- GraphProt: modelling binding preferences of RNA-binding proteins☆20Jul 19, 2018Updated 7 years ago
- A small collection of useful tutorials and links☆15Apr 13, 2024Updated last year
- ☆17May 5, 2020Updated 5 years ago
- Complete analysis pipeline for PAR-CLIP data☆10May 7, 2015Updated 10 years ago
- Convenience functions for VMD-TCL scripting☆14Jul 16, 2025Updated 8 months ago
- R scripts for NGS data visualization☆13Oct 1, 2025Updated 5 months ago
- A Perl/R pipeline for plotting metagenes☆37Sep 17, 2021Updated 4 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11Jan 20, 2026Updated 2 months ago
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- SSR: A Unifed Framework for Prediction in Secondary Structure of RNA. 整合了LinearFold, E2Efold, MXfold2算法,包含数据集,欢迎一键使用。☆10Dec 31, 2021Updated 4 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆66Jul 17, 2024Updated last year
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆184Updated this week
- Golang VNC screenshot utility☆13Feb 19, 2018Updated 8 years ago
- Development version of the pbctools plugin for VMD.☆16Aug 19, 2025Updated 7 months ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- R CRAN package `diptest` : Hartigan's diptest for unimodality (including p-values)☆11Aug 19, 2025Updated 7 months ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107May 23, 2025Updated 9 months ago
- ☆10Dec 12, 2017Updated 8 years ago
- MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis☆12Feb 16, 2026Updated last month
- Quartet-based species tree and tree of blob estimation☆15Feb 10, 2026Updated last month
- ☆11Mar 11, 2025Updated last year
- A nextflow pipeline for performing bacterial RNA-Seq data analysis.☆12Oct 14, 2025Updated 5 months ago
- Scripts and data for OceanAdapt website to visualize shifts in marine animal distributions☆15Jul 1, 2023Updated 2 years ago
- An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…☆16Jul 20, 2018Updated 7 years ago
- 基于词典的正向最大匹配分词算法和基于词典的逆向最大匹配分词算法☆12Dec 12, 2017Updated 8 years ago
- Octree is a shallow tree structure for 3-dimensional points☆20Jul 22, 2020Updated 5 years ago
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆33Jan 25, 2026Updated last month
- the process of operating data types in the TCGA database☆19Dec 11, 2020Updated 5 years ago