Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
☆804Jun 27, 2026Updated this week
Alternatives and similar repositories for Open-AF3
Users that are interested in Open-AF3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of Alphafold 3 from Google Deepmind in Pytorch☆1,674Sep 18, 2025Updated 9 months ago
- Open source implementation of AlphaFold3☆1,081Oct 7, 2024Updated last year
- ☆810May 18, 2026Updated last month
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆1,974May 6, 2026Updated last month
- Making Protein Design accessible to all via Google Colab!☆921Apr 6, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Chai-1, SOTA model for biomolecular structure prediction☆1,956Apr 11, 2026Updated 2 months ago
- Diffusion-based all-atom protein generative model.☆237Aug 27, 2025Updated 10 months ago
- Code for running RFdiffusion☆2,927Apr 24, 2026Updated 2 months ago
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,391Dec 16, 2025Updated 6 months ago
- ☆593Feb 6, 2025Updated last year
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆530Mar 22, 2026Updated 3 months ago
- List of papers about Proteins Design using Deep Learning☆1,939Updated this week
- A generative model for programmable protein design☆822Apr 11, 2024Updated 2 years ago
- AlphaFold 3 inference pipeline.☆8,275Jun 25, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆118Jan 3, 2026Updated 6 months ago
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆331Oct 6, 2025Updated 8 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 3 years ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,140Feb 7, 2024Updated 2 years ago
- ☆2,800Jun 16, 2026Updated 2 weeks ago
- Plausibility checks for generated molecule poses.☆381Mar 7, 2026Updated 3 months ago
- Public RFDiffusionAA repo☆482Jul 9, 2024Updated last year
- Diffusion models of protein structure; trigonometry and attention are all you need!☆566Dec 12, 2023Updated 2 years ago
- Official repository for the Boltz biomolecular interaction models☆4,075May 29, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,255May 13, 2026Updated last month
- ☆142Jun 3, 2025Updated last year
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆607Mar 8, 2026Updated 3 months ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆410Feb 26, 2026Updated 4 months ago
- Code for the ProteinMPNN paper☆1,778Aug 14, 2024Updated last year
- Improved antibody structure-based design using inverse folding☆166Dec 9, 2025Updated 6 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆236Dec 29, 2023Updated 2 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆258Mar 26, 2026Updated 3 months ago
- User friendly and accurate binder design pipeline☆1,145May 11, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Sidechain conditioning and modeling for full-atom protein sequence design☆142Nov 11, 2025Updated 7 months ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆193Jun 24, 2024Updated 2 years ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆378Jun 3, 2024Updated 2 years ago
- Code for ColabDock paper☆157May 1, 2025Updated last year
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆671Jan 15, 2026Updated 5 months ago
- Making Protein folding accessible to all!☆2,810Jun 21, 2026Updated last week
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,532May 2, 2025Updated last year