jlabeit / parallel-divsufsortLinks
Parallel Lightweight Suffix Array Algorithm.
☆18Updated 8 years ago
Alternatives and similar repositories for parallel-divsufsort
Users that are interested in parallel-divsufsort are comparing it to the libraries listed below
Sorting:
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆83Updated last year
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆107Updated 10 years ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 3 years ago
- A tool for merging large BWTs☆26Updated 4 years ago
- Succinct Data Structure Library 3.0☆95Updated last month
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆26Updated 2 years ago
- Dynamic succinct/compressed data structures☆111Updated last year
- In-place Parallel Super Scalar Radix Sort (IPS²Ra)☆34Updated 8 months ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆89Updated this week
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆39Updated last year
- Parallel Block GZIP☆50Updated 9 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆66Updated 2 years ago
- C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings☆154Updated last year
- An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.☆44Updated 3 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Updated 2 months ago
- Bit packed vector of integral values☆27Updated 7 months ago
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆15Updated 7 years ago
- An efficient external-memory algorithm for the construction of minimal perfect hash functions☆64Updated last year
- Truly parallel gzip decompression☆124Updated 6 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆82Updated last year
- compressed, queryable variation graphs☆11Updated 10 years ago
- gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]☆28Updated 7 months ago
- A lightweight suffix-sorting library☆391Updated 5 years ago
- A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)☆168Updated last year
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆51Updated last year
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- Efficient construction of the BWT using string compression☆20Updated 3 months ago
- The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.☆18Updated 3 years ago
- BWT-based index for graphs☆72Updated 6 months ago