jlabeit / parallel-divsufsortLinks
Parallel Lightweight Suffix Array Algorithm.
☆17Updated 8 years ago
Alternatives and similar repositories for parallel-divsufsort
Users that are interested in parallel-divsufsort are comparing it to the libraries listed below
Sorting:
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆83Updated last year
- Parallel Block GZIP☆50Updated 9 years ago
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆107Updated 10 years ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 3 years ago
- A tool for merging large BWTs☆25Updated 4 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆89Updated this week
- Truly parallel gzip decompression☆124Updated 6 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆65Updated 2 years ago
- Extremely fast inplace radix sort☆42Updated 5 years ago
- Dynamic succinct/compressed data structures☆110Updated last year
- Succinct Data Structure Library 3.0☆95Updated last month
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆26Updated 2 weeks ago
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆39Updated last year
- In-place Parallel Super Scalar Radix Sort (IPS²Ra)☆34Updated 9 months ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- Efficient construction of the BWT using string compression☆20Updated 4 months ago
- BWT-based index for graphs☆73Updated 7 months ago
- An efficient external-memory algorithm for the construction of minimal perfect hash functions☆64Updated last year
- A lightweight suffix-sorting library☆393Updated 5 years ago
- A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)☆168Updated last year
- A cheatsheet for most common Stringology tasks☆14Updated 4 years ago
- FM-index representation of a de Bruijn graph☆27Updated 8 years ago
- C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings☆154Updated last year
- memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort☆26Updated 4 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Updated 3 months ago
- gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]☆28Updated 8 months ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆53Updated last year
- Bloom-filter based minimal perfect hash function library☆265Updated 3 months ago
- Fast hash function for DNA/RNA sequences☆104Updated last year