C++ Implementations of Suffix Array Constructions Algorithms for SA-IS and Skew as well as Kasai's algorithm for LCP construction.
☆16May 31, 2021Updated 5 years ago
Alternatives and similar repositories for Suffix-Arrays-in-CPP
Users that are interested in Suffix-Arrays-in-CPP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Jul 16, 2017Updated 9 years ago
- Collection of Suffix Array Construction Algorithms (SACAs)☆35Mar 29, 2019Updated 7 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 2 months ago
- Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.☆23Dec 14, 2024Updated last year
- 基于matlab和bag of words的图像分类☆11Mar 15, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated 2 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 6 months ago
- ☆24Jul 15, 2026Updated 2 months ago
- ☆11Apr 3, 2023Updated 3 years ago
- ☆13Sep 11, 2025Updated last year
- reference free variant assembly☆34Jul 14, 2023Updated 3 years ago
- Bit packed vector of integral values☆29Jan 28, 2025Updated last year
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- Population-scale detection of novel sequence insertions☆28Aug 16, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A Tamarin model and analysis of EMV contactless☆15Feb 16, 2021Updated 5 years ago
- Graphite - Graph-based variant adjudication☆28Feb 9, 2021Updated 5 years ago
- tandem repeat finding from erroneous long reads☆15Jun 30, 2026Updated 2 months ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆30Sep 23, 2022Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- ☆24Apr 2, 2021Updated 5 years ago
- msufsort parallel suffix array construction algorithm☆30Nov 16, 2020Updated 5 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated last year
- Arithmetic Coding for Data Compression☆16Feb 13, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Blockchain wallet and portfolio.☆11Apr 20, 2023Updated 3 years ago
- TCP/UDP transparent proxy with predefined bypass address set, using nftables `tproxy` target.☆15Oct 7, 2021Updated 4 years ago
- A C++ implementation of a Generalized Suffix Tree using Ukkonen's algorithm☆22Jul 11, 2016Updated 10 years ago
- Hands-on HPC I/O tutorial material☆19Aug 6, 2026Updated last month
- Read alignment with a multi-genome reference☆23Jan 14, 2020Updated 6 years ago
- A minimal SOCKS5 proxy written in C.☆12Mar 8, 2021Updated 5 years ago
- ☆13Jul 5, 2022Updated 4 years ago
- ☆19Jul 15, 2026Updated 2 months ago
- InternetOff turns access to the Internet off and on again, without affecting access to the local network. It is a small program that work…☆13Jan 1, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- STR genotyping with WGS and Amplicon/Target sequencing data☆16Feb 2, 2026Updated 7 months ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- In-place Parallel Super Scalar Radix Sort (IPS²Ra)☆37Updated this week
- Graph based multi genome aligner☆49Sep 17, 2021Updated 5 years ago
- Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research☆16Nov 29, 2021Updated 4 years ago
- Fast and Strong Burrows Wheeler Model☆21Nov 6, 2018Updated 7 years ago
- library module SIM7600☆13Nov 5, 2022Updated 3 years ago