kundajelab / deepbindLinks
I have put my modified version of the deepbind code here.
☆8Updated 9 years ago
Alternatives and similar repositories for deepbind
Users that are interested in deepbind are comparing it to the libraries listed below
Sorting:
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Updated 8 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- ☆12Updated 8 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- ☆15Updated 9 years ago
- GenoTypes Compressor☆15Updated 3 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13Updated 6 years ago
- Graphical assessment of structrial variants using 10x genomics data☆10Updated 8 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- Scripts supporting identification of genomic features affecting survival time in cancer☆12Updated 6 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆28Updated last month
- ☆25Updated 4 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- Simulating the expected output from a GWAS with a given causal model.☆11Updated 4 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Updated 8 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Population Reference Graphs for the HLA and MHC.☆35Updated 6 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆15Updated last year
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 2 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Updated 6 years ago
- This BLENDER has been sunsetted☆16Updated 9 months ago