kundajelab / deepbindLinks
I have put my modified version of the deepbind code here.
☆8Updated 9 years ago
Alternatives and similar repositories for deepbind
Users that are interested in deepbind are comparing it to the libraries listed below
Sorting:
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- Scripts supporting identification of genomic features affecting survival time in cancer☆12Updated 6 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- stageR package☆13Updated 2 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Updated 6 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- ☆10Updated 4 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 7 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆14Updated 8 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Updated 7 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)☆9Updated 7 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆27Updated this week
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆29Updated 6 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Exon-exon splice junctions across SRA☆40Updated 3 years ago
- JEME method for predicting enhancer targets☆11Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Signed LD profile regression code☆17Updated 3 months ago