hanfang / Topsorter
Graphical assessment of structrial variants using 10x genomics data
☆10Updated 7 years ago
Alternatives and similar repositories for Topsorter:
Users that are interested in Topsorter are comparing it to the libraries listed below
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 2 months ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- What's The Function of these genes?☆22Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- BED QC tool (in the making)☆15Updated 2 years ago
- ☆21Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Population genetics analysis on VG☆16Updated 3 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated last month
- Estimate linkage disequilibrium between unphased loci☆11Updated 9 years ago
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Updated 7 years ago
- reference free variant assembly☆32Updated last year
- ☆12Updated 3 years ago
- ☆12Updated 7 years ago
- Sample Contamination Estimate from VCF☆19Updated 2 months ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 5 months ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Updated 2 years ago