Alternatives and similar repositories for concise:

Users that are interested in concise are comparing it to the libraries listed below

• kieranrcampbell / ouijaflow
  Probabilistic single-cell pseudotime with Edward+Tensorflow
  ☆12Updated 7 years ago
• Teichlab / GPfates
  ☆19Updated 7 years ago
• ma-compbio / PEP
  ☆14Updated 4 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 7 months ago
• rthurman / hotspot
  Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.
  ☆14Updated 10 years ago
• davidaknowles / eagle
  An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…
  ☆21Updated 3 years ago
• YosefLab / FastProject
  Dimensionality reduction for single cell RNA-seq data
  ☆35Updated 4 years ago
• rajanil / msCentipede
  A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.
  ☆26Updated 8 years ago
• Xinglab / rPGA
  ☆13Updated 8 years ago
• wenjiegroup / PEDLA
  PEDLA: predicting enhancers with deep learning-based algorithmic framework
  ☆16Updated 9 years ago
• yakirr / sldp
  Signed LD profile regression code
  ☆17Updated 2 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 5 years ago
• theislab / graph_abstraction
  Generate cellular maps of differentiation manifolds with complex topologies.
  ☆26Updated 6 years ago
• jpiper / pyDNase
  Python module for the easy handling and analysis of DNase-seq data
  ☆37Updated 5 years ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆53Updated 5 years ago
• epigen / cll-chromatin
  Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)
  ☆9Updated 7 years ago
• BoevaLab / SV-Bay
  Detection of structural variants in cancer mate-pair and paired-end data
  ☆12Updated 5 years ago
• thucombio / deepnet-rbp
  ☆20Updated 9 years ago
• flo-compbio / xlmhg
  XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.
  ☆13Updated 2 years ago
• sirajulsalekin / DeepSNR
  Base-pair resolution detection of transcription factor binding site by deep deconvolutional network
  ☆10Updated 7 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 5 years ago
• edsgard / scphaser
  R package for haplotype phasing using single-cell RNA-seq data
  ☆13Updated 7 years ago
• aboyle / F-seq
  A Feature Density Estimator for High-Throughput Sequence Tags
  ☆23Updated 3 years ago
• nellore / intropolis
  Exon-exon splice junctions across SRA
  ☆39Updated 3 years ago
• quinlan-lab / mendelianerror
  probability of mendelian error in trios.
  ☆11Updated 8 years ago
• abyzovlab / vcf2diploid
  personal genome constructor
  ☆9Updated 6 months ago
• favorov / stereogene
  ☆12Updated last month
• Simon-Coetzee / StatePaintR
  ☆10Updated 7 years ago