GuyAllard / SPINGO
SPecies level IdentificatioN of metaGenOmic amplicons
☆10Updated 7 years ago
Alternatives and similar repositories for SPINGO:
Users that are interested in SPINGO are comparing it to the libraries listed below
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 weeks ago
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Updated 4 years ago
- Metagenomics microbial abundance quantification☆28Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 3 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 5 years ago
- R package for fetching and parsing data of the Human Microbiome Compendium☆10Updated 3 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- De novo VIral Genome Annotator☆21Updated 7 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- fastx-utils using klib☆18Updated 4 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 6 months ago
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆15Updated last week
- Processing support for Greengenes2☆12Updated last year
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- This is a read-only mirror of the CRAN R package repository. chromoMap — Interactive Genomic Visualization of Biological Data☆9Updated 3 years ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆10Updated 5 years ago
- ☆15Updated 3 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Updated 3 years ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 3 years ago
- A fast method for analysis of composition of microbiomes☆8Updated 3 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 8 years ago