GuyAllard / SPINGOLinks
SPecies level IdentificatioN of metaGenOmic amplicons
☆10Updated 7 years ago
Alternatives and similar repositories for SPINGO
Users that are interested in SPINGO are comparing it to the libraries listed below
Sorting:
- OPAL: Open-community Profiling Assessment tooL☆29Updated 6 months ago
- Evolutionary Transcriptomics with R☆44Updated last week
- catalog for long-read sequencing tools☆32Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆11Updated 4 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated this week
- Metagenomics microbial abundance quantification☆28Updated 2 years ago
- processing 10x genomics reads☆26Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 3 months ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆32Updated 2 years ago
- Latest MOCAT2 version☆19Updated 4 years ago
- ☆33Updated last year
- ☆29Updated 4 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 2 years ago
- ☆45Updated 8 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- Error correction of ONT transcript reads☆58Updated last year
- ☆11Updated 3 weeks ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- ☆19Updated 2 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated last month