SPecies level IdentificatioN of metaGenOmic amplicons
☆11Apr 11, 2018Updated 8 years ago
Alternatives and similar repositories for SPINGO
Users that are interested in SPINGO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Feb 3, 2022Updated 4 years ago
- ☆17May 21, 2025Updated 11 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆25Jan 24, 2024Updated 2 years ago
- ☆10Sep 26, 2019Updated 6 years ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆21Dec 1, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The codes and files for the study of subsolid nodules (SSN).☆15Oct 13, 2020Updated 5 years ago
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Oct 14, 2024Updated last year
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- A package for Unicode-friendly string compression using Unishox2☆24Nov 5, 2022Updated 3 years ago
- ☆38Jan 13, 2022Updated 4 years ago
- Code + Visualizations processing and visualizing Pokémon data in 3D☆23Aug 3, 2016Updated 9 years ago
- long-read depth breaking☆11Apr 19, 2018Updated 8 years ago
- ☆23Nov 6, 2020Updated 5 years ago
- Large scale Blast Score Ratio (BSR) analysis☆37Nov 18, 2025Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆23Nov 25, 2025Updated 5 months ago
- An application to remove PCR duplicates from high throughput sequencing runs.☆11Apr 22, 2018Updated 8 years ago
- An R package for drug response prediction and drug-gene association prediction.☆26May 9, 2025Updated 11 months ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago
- ☆23Jun 29, 2018Updated 7 years ago
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Feb 12, 2018Updated 8 years ago
- The current study provides a comprehensive insights into the PDAC metastatic biology.☆25Aug 3, 2024Updated last year
- Single cell analysis in regenerative lineages and immune-mediated pruning in lung cancer metastasis☆23Jun 5, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆35Nov 8, 2023Updated 2 years ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- ☆13Apr 22, 2021Updated 5 years ago
- Code for the identification step for CSI-Microbes☆31Nov 25, 2024Updated last year
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Mar 25, 2023Updated 3 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆25Feb 1, 2026Updated 3 months ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Dec 20, 2024Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆52Jun 5, 2018Updated 7 years ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Nov 20, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds☆33Nov 26, 2015Updated 10 years ago
- ITEP - Integrated Toolkit for Exploration of microbial Pan-genomes☆28Feb 15, 2019Updated 7 years ago
- Cytofin-an R package for CyTOF data integration☆12Jan 13, 2022Updated 4 years ago
- Colinear block visualisation tool☆31Jan 17, 2024Updated 2 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆38Apr 9, 2026Updated 3 weeks ago
- ☆10Dec 2, 2025Updated 5 months ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago