GuyAllard / SPINGO
SPecies level IdentificatioN of metaGenOmic amplicons
☆10Updated 6 years ago
Related projects: ⓘ
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- OPAL: Open-community Profiling Assessment tooL☆26Updated last month
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆23Updated last year
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 4 years ago
- Metagenomics microbial abundance quantification☆27Updated last year
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11Updated 4 years ago
- Set of utilities on sequences and BAM files☆25Updated 2 years ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆10Updated 4 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 5 months ago
- A shiny package for microbiome functional enrichment analysis☆36Updated last month
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Read nanopore sequence reads in real-time☆13Updated 7 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 5 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆18Updated last year
- toolkit to process gtf files☆16Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆17Updated 3 years ago
- The shiny app that accompanies the ngsReports R package☆14Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 3 months ago
- A snakemake workflow for metagenomic projects☆13Updated last year
- fastq quality assessment and filtering tool☆18Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆21Updated 4 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆30Updated 5 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆20Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆11Updated 8 years ago
- Find Unique genomic Regions☆29Updated 2 weeks ago