kiharalab / DiffModelerLinks
DiffModeler: a diffusion model based protein complex structure modeling tool.
☆57Updated this week
Alternatives and similar repositories for DiffModeler
Users that are interested in DiffModeler are comparing it to the libraries listed below
Sorting:
- CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.☆32Updated last year
- A comprehensive foundation model for cryo-EM image processing☆45Updated last week
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆121Updated 9 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆59Updated last year
- Leveraging Structural Priors and Constraints for Cryo-EM Heterogeneous Reconstruction☆67Updated last year
- ☆75Updated 10 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆80Updated last year
- Public version for Distance-AF☆28Updated 3 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 6 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆84Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated 2 years ago
- ☆128Updated 6 months ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆50Updated 3 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆73Updated 2 years ago
- ☆107Updated 2 years ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆88Updated 2 years ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆27Updated 2 years ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Updated 2 years ago
- ☆15Updated last year
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆100Updated 2 years ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆89Updated 6 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- Official repository of EnzymeFlow☆97Updated last year
- FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)☆134Updated 4 months ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆44Updated last month
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆96Updated 6 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆66Updated 9 months ago
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆71Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆70Updated 4 months ago