kiharalab / DiffModelerLinks
DiffModeler: a diffusion model based protein complex structure modeling tool.
☆51Updated last month
Alternatives and similar repositories for DiffModeler
Users that are interested in DiffModeler are comparing it to the libraries listed below
Sorting:
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆58Updated last year
- CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.☆29Updated 9 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆113Updated 4 months ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆96Updated 2 years ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆36Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆61Updated last month
- ☆73Updated 5 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆78Updated last year
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆61Updated 10 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆58Updated 4 months ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆88Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆77Updated last year
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆75Updated last year
- ☆48Updated 6 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- ☆13Updated last year
- ☆106Updated 2 years ago
- A standardized protein design benchmark for motif-scaffolding problems☆63Updated 2 months ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆49Updated last year
- ☆65Updated last year
- ☆100Updated last month
- Structure-conditioned masked language modeling for protein sequence design☆64Updated last year
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆64Updated 11 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated 11 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- Implementation of AlphaFold 3 in PyTorch Lightning + Hydra☆34Updated 9 months ago
- [ICLR 2024 Spotlight] The official repo for the paper "De novo Protein Design using Geometric Vector Field Networks".☆30Updated 10 months ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆26Updated 2 years ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆48Updated last year
- ☆91Updated 9 months ago