Alternatives and similar repositories for Cryo-IEF

Users that are interested in Cryo-IEF are comparing it to the libraries listed below

• kiharalab / DiffModeler
  DiffModeler: a diffusion model based protein complex structure modeling tool.
  ☆58Updated last week
• 3dem / model-angelo
  Automatic atomic model building program for cryo-EM maps
  ☆157Updated 7 months ago
• kiharalab / CryoREAD
  CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
  ☆32Updated last year
• alncat / opusDSD
  deep structural disentanglement
  ☆42Updated last week
• bytedance / cryostar
  Leveraging Structural Priors and Constraints for Cryo-EM Heterogeneous Reconstruction
  ☆67Updated last year
• SBQ-1999 / CryFold
  From cryo-EM density map to atomic structure
  ☆31Updated 4 months ago
• XintSong / RMSF-net
  ☆15Updated last year
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• BioinfoMachineLearning / DIPS-Plus
  The Enhanced Database of Interacting Protein Structures for Interface Prediction
  ☆51Updated 3 months ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆84Updated last year
• levinthal / Pallatom
  ☆131Updated 6 months ago
• ml-struct-bio / drgnai
  ☆54Updated 3 months ago
• TianZhuAI4S / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆37Updated 2 years ago
• bytedance / ConfDiff
  Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models
  ☆71Updated last year
• zhengkangjie / ESM-AA
  ☆76Updated 10 months ago
• kiharalab / EM-GAN
  EM-GAN is a computational tool, which enables capturing protein structure information from cryo-EM maps more effectively than raw maps. I…
  ☆16Updated 9 months ago
• kiharalab / DeepMainMast
  DeepMainmast
  ☆15Updated last year
• mxhulab / cryopros
  ☆35Updated 6 months ago
• IsoNet-cryoET / spIsoNet
  Overcoming the preferred orientation problem in cryoEM with self-supervised deep-learning
  ☆35Updated 4 months ago
• BioinfoMachineLearning / ATOMRefine
  3D equivariant graph transformer for all-atom refinement of protein tertiary structures
  ☆27Updated 2 years ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆122Updated 9 months ago
• kiharalab / Emap2secPlus
  Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning
  ☆18Updated last month
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆47Updated last year
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆80Updated last year
• kiharalab / Distance-AF
  Public version for Distance-AF
  ☆29Updated 4 months ago
• ml-struct-bio / CryoBench
  Diverse and challenging datasets for the heterogeneity problem in cryo-EM
  ☆36Updated 8 months ago
• THUNLP-MT / MEAN
  This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
  ☆101Updated 2 years ago
• ai4protein / ProtSSN
  🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…
  ☆78Updated 7 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆67Updated 3 months ago
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆59Updated last year