kiharalab / CryoREAD
CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
☆28Updated 5 months ago
Alternatives and similar repositories for CryoREAD:
Users that are interested in CryoREAD are comparing it to the libraries listed below
- DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps☆16Updated last month
- DiffModeler: a diffusion model based protein complex structure modeling tool.☆49Updated last week
- ☆80Updated 6 months ago
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated last year
- ☆12Updated 8 months ago
- Predicting the effect of mutations on protein stability using a simple orientational potential.☆16Updated 8 months ago
- Public version for Distance-AF☆21Updated 11 months ago
- ☆58Updated 11 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated 10 months ago
- ☆48Updated 2 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆53Updated last week
- Modelling protein conformational landscape with Alphafold☆45Updated 2 weeks ago
- FebRNA: an automated fragment-ensemble-based model for building RNA 3D structures.☆8Updated 2 years ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆57Updated 9 months ago
- SWift and Optimized Recognition of protein Domains☆28Updated 6 months ago
- Generative diverse protein backbones by protein language model☆31Updated 3 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆28Updated 9 months ago
- protein structure generation with sparse all-atom denoising models☆29Updated last month
- Open source code for AlphaFold.☆39Updated 2 years ago
- Learning Structure-based Pocket Representations for Protein-Ligand Interaction Prediction☆32Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆33Updated 10 months ago
- dMaSIF implementation for google colab☆31Updated 2 years ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆25Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆65Updated 7 months ago
- DLPacker☆30Updated 7 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆73Updated 9 months ago
- Official repository of GENzyme☆45Updated 4 months ago
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- Evaluating Protein Binding Interfaces with Transformer Networks☆44Updated last year
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆45Updated 3 months ago