kiharalab / CryoREAD
CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
☆28Updated 6 months ago
Alternatives and similar repositories for CryoREAD:
Users that are interested in CryoREAD are comparing it to the libraries listed below
- DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps☆16Updated 2 months ago
- DiffModeler: a diffusion model based protein complex structure modeling tool.☆49Updated last month
- ☆82Updated 7 months ago
- ☆12Updated 10 months ago
- SWift and Optimized Recognition of protein Domains☆28Updated 7 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆34Updated last month
- Public version for Distance-AF☆22Updated last year
- Modelling protein conformational landscape with Alphafold☆48Updated this week
- ☆48Updated 4 months ago
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆55Updated 3 weeks ago
- ☆60Updated last year
- ☆27Updated 2 years ago
- Efficient manipulation of protein structures in Python☆53Updated 6 months ago
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated 11 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆56Updated 2 weeks ago
- Open source code for AlphaFold.☆39Updated 2 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆66Updated 8 months ago
- ☆37Updated last year
- A 3D-equivariant neural network for protein structure accuracy estimation☆18Updated 2 years ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆57Updated 10 months ago
- Predicting the effect of mutations on protein stability using a simple orientational potential.☆16Updated 10 months ago
- ☆26Updated 6 months ago
- ☆16Updated this week
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆26Updated last year
- DeepMainmast☆13Updated 9 months ago
- ☆69Updated 3 months ago
- ☆92Updated 6 months ago
- Generative diverse protein backbones by protein language model☆31Updated 5 months ago