kiharalab / CryoREAD
CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
☆28Updated last month
Related projects ⓘ
Alternatives and complementary repositories for CryoREAD
- ☆74Updated last month
- DiffModeler: a diffusion model based protein complex structure modeling tool.☆39Updated 2 weeks ago
- ☆42Updated last year
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆58Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆37Updated 6 months ago
- Public version for Distance-AF☆17Updated 7 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆32Updated last week
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆64Updated 2 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆48Updated 3 months ago
- dMaSIF implementation for google colab☆29Updated last year
- ☆36Updated last year
- ☆42Updated 7 months ago
- AlphaFold-initiated replica exchange protein docking☆45Updated 3 months ago
- Open source code for AlphaFold.☆37Updated last year
- Predicting the effect of mutations on protein stability using a simple orientational potential.☆15Updated 4 months ago
- ☆95Updated last year
- Tool for modelling the CDRs of antibodies☆45Updated last year
- Python interface for the RCSB PDB search API.☆53Updated last month
- ☆25Updated last year
- ☆35Updated 11 months ago
- ☆35Updated 10 months ago
- Structure prediction of alternative protein conformations☆71Updated 2 months ago
- SWift and Optimized Recognition of protein Domains☆24Updated last month
- ☆20Updated last year
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆52Updated 9 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆84Updated 3 months ago
- Improved antibody structure-based design using inverse folding☆75Updated 2 months ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆40Updated 2 months ago
- ☆21Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆30Updated 5 months ago