CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
☆32Oct 14, 2024Updated last year
Alternatives and similar repositories for CryoREAD
Users that are interested in CryoREAD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DiffModeler: a diffusion model based protein complex structure modeling tool.☆59Jan 12, 2026Updated 4 months ago
- Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning☆19Nov 21, 2025Updated 6 months ago
- DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps☆17Jan 30, 2026Updated 3 months ago
- Automatic atomic model building program for cryo-EM maps☆169May 18, 2026Updated last week
- These are programs that deal with anisotropy (both resolution and sampling)☆23Mar 16, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Deep learning for cryo-EM maps post-processing☆59Jun 26, 2025Updated 11 months ago
- Leveraging Structural Priors and Constraints for Cryo-EM Heterogeneous Reconstruction☆67Nov 4, 2024Updated last year
- Public version for Distance-AF☆31Aug 17, 2025Updated 9 months ago
- DeepMainmast☆15Aug 12, 2024Updated last year
- A deep manifold learning framework for 4D cryo-EM data processing for simultaneous determination of high-resolution structures and dynami…☆19Sep 12, 2022Updated 3 years ago
- automated on-the-fly tilt-series alignment☆11Jul 6, 2021Updated 4 years ago
- HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.☆29Aug 23, 2025Updated 9 months ago
- The SIRM-RELION is designed to mitigate the preferred-orientation induced map distortion.☆17Aug 19, 2025Updated 9 months ago
- cryo_fit1 source codes, test files, live at .../phenix-xxxx/modules☆10Mar 25, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- New program to follow Relion projects in a browser!☆48Jan 5, 2026Updated 4 months ago
- ☆12Apr 4, 2023Updated 3 years ago
- ☆19Feb 3, 2025Updated last year
- Useful aliases and startup settings for ChimeraX☆41May 14, 2026Updated 2 weeks ago
- GPU accelerated software package for CTF estimation of cryoEM micrographs and cryoET tilt series☆25May 18, 2026Updated last week
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jul 19, 2023Updated 2 years ago
- EM-GAN is a computational tool, which enables capturing protein structure information from cryo-EM maps more effectively than raw maps. I…☆17Mar 4, 2025Updated last year
- Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms☆31Jul 17, 2025Updated 10 months ago
- ☆44May 19, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- From cryo-EM density map to atomic structure☆31Aug 17, 2025Updated 9 months ago
- Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset☆33Sep 18, 2025Updated 8 months ago
- MapQ is a plugin for UCSF Chimera to calculate Q-scores of an atomic model in a cryoEM map.☆17Aug 26, 2025Updated 9 months ago
- A somewhat cleaned-up version of the TOM toolbox for electron tomography☆16Nov 26, 2016Updated 9 years ago
- a bidirectional interface between Dynamo and the Warp-RELION-M pipeline☆20Jul 28, 2023Updated 2 years ago
- SWift and Optimized Recognition of protein Domains☆30Apr 6, 2026Updated last month
- Detect and erase gold fiducials in cryo-EM images☆15May 27, 2025Updated last year
- ☆60Apr 7, 2026Updated last month
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆20Apr 3, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆38Jun 22, 2023Updated 2 years ago
- ☆19Jan 23, 2026Updated 4 months ago
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- deep structural disentanglement☆41May 10, 2026Updated 2 weeks ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆27Dec 3, 2024Updated last year
- ☆16Jul 9, 2024Updated last year
- GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the …☆12Apr 7, 2023Updated 3 years ago