CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
☆32Oct 14, 2024Updated last year
Alternatives and similar repositories for CryoREAD
Users that are interested in CryoREAD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DiffModeler: a diffusion model based protein complex structure modeling tool.☆58Jan 12, 2026Updated 3 months ago
- Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning☆19Nov 21, 2025Updated 4 months ago
- DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps☆17Jan 30, 2026Updated 2 months ago
- Automatic atomic model building program for cryo-EM maps☆163Apr 1, 2026Updated 2 weeks ago
- These are programs that deal with anisotropy (both resolution and sampling)☆22Mar 16, 2018Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Deep learning for cryo-EM maps post-processing☆58Jun 26, 2025Updated 9 months ago
- Leveraging Structural Priors and Constraints for Cryo-EM Heterogeneous Reconstruction☆67Nov 4, 2024Updated last year
- Public version for Distance-AF☆31Aug 17, 2025Updated 8 months ago
- DeepMainmast☆15Aug 12, 2024Updated last year
- A deep manifold learning framework for 4D cryo-EM data processing for simultaneous determination of high-resolution structures and dynami…☆19Sep 12, 2022Updated 3 years ago
- automated on-the-fly tilt-series alignment☆11Jul 6, 2021Updated 4 years ago
- HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.☆29Aug 23, 2025Updated 7 months ago
- The SIRM-RELION is designed to mitigate the preferred-orientation induced map distortion.☆17Aug 19, 2025Updated 7 months ago
- cryo_fit1 source codes, test files, live at .../phenix-xxxx/modules☆10Mar 25, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- New program to follow Relion projects in a browser!☆48Jan 5, 2026Updated 3 months ago
- ☆12Apr 4, 2023Updated 3 years ago
- ☆19Feb 3, 2025Updated last year
- EM-GAN is a computational tool, which enables capturing protein structure information from cryo-EM maps more effectively than raw maps. I…☆17Mar 4, 2025Updated last year
- Useful aliases and startup settings for ChimeraX☆41Apr 4, 2026Updated 2 weeks ago
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jul 19, 2023Updated 2 years ago
- GPU accelerated software package for CTF estimation of cryoEM micrographs and cryoET tilt series☆25Mar 5, 2026Updated last month
- Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms☆31Jul 17, 2025Updated 9 months ago
- ☆43Apr 10, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- From cryo-EM density map to atomic structure☆30Aug 17, 2025Updated 8 months ago
- Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset☆32Sep 18, 2025Updated 7 months ago
- MapQ is a plugin for UCSF Chimera to calculate Q-scores of an atomic model in a cryoEM map.☆17Aug 26, 2025Updated 7 months ago
- A somewhat cleaned-up version of the TOM toolbox for electron tomography☆16Nov 26, 2016Updated 9 years ago
- a bidirectional interface between Dynamo and the Warp-RELION-M pipeline☆20Jul 28, 2023Updated 2 years ago
- SWift and Optimized Recognition of protein Domains☆29Apr 6, 2026Updated last week
- Detect and erase gold fiducials in cryo-EM images☆15May 27, 2025Updated 10 months ago
- ☆60Apr 7, 2026Updated last week
- structural heterogeneity analysis and reconstruction for cryo-ET subtomogram☆10Apr 4, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆20Apr 3, 2021Updated 5 years ago
- ☆38Jun 22, 2023Updated 2 years ago
- Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.☆30Jun 3, 2022Updated 3 years ago
- ☆19Jan 23, 2026Updated 2 months ago
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆26Dec 3, 2024Updated last year
- deep structural disentanglement☆42Apr 7, 2026Updated last week