BioinfoMachineLearning / ATOMRefineLinks
3D equivariant graph transformer for all-atom refinement of protein tertiary structures
☆27Updated 2 years ago
Alternatives and similar repositories for ATOMRefine
Users that are interested in ATOMRefine are comparing it to the libraries listed below
Sorting:
- Interpretable AI pipeline improving binding predictions for novel protein targets and ligands☆40Updated last year
- Evaluating Protein Binding Interfaces with Transformer Networks☆47Updated 2 years ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆82Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆45Updated 10 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆57Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 11 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆49Updated 2 weeks ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- ☆65Updated 2 years ago
- ☆62Updated last year
- ☆94Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆124Updated 4 months ago
- ☆42Updated last year
- ☆76Updated 8 months ago
- ☆78Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆56Updated 5 months ago
- ☆302Updated this week
- Code for humanization of antibody and nanobody☆58Updated 2 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆86Updated 4 months ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆50Updated last month
- ☆30Updated 3 months ago
- ☆50Updated 9 months ago
- ☆39Updated last year
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆76Updated 2 months ago
- ☆77Updated last year
- Diffusion model based protein-ligand flexible docking method☆114Updated 11 months ago
- Reaction-Conditioned Virtual Screening of Enzymes☆39Updated 4 months ago