bartongroup / profDGE48
Code base for profiling highly replicated differential gene expression RNA-seq.
☆10Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for profDGE48
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 4 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated 10 months ago
- Evolutionary frequency visualization tool of temporal data☆21Updated 2 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆15Updated 5 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 3 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 2 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆42Updated 9 months ago
- Open-Source Software for Omic Data Analysis and Visualization☆32Updated 2 months ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 5 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 11 months ago
- An htmlwidget version of igv, for RStudio and Shiny apps☆36Updated 2 months ago
- countsimQC - Compare characteristic features of count data sets☆27Updated last week
- Quick access to gene synonyms☆26Updated this week
- Bioconductor package that makes BIG data pint-sized.☆20Updated 9 months ago
- Toolbox package for organizing and working with TCGA data☆23Updated last week
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆27Updated 4 years ago
- R package for benchmarking single cell analysis methods☆29Updated last year
- Gene-level general linear mixed model☆18Updated last month
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆35Updated last year
- Tutorial to reproduce the analysis of Peixoto et al. (2015)☆10Updated 8 years ago
- Brings SummarizedExperiment to the tidyverse☆25Updated 5 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆20Updated 6 months ago
- Functional enrichment analysis of high-throughput omics data☆20Updated 4 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆21Updated this week
- the manifesto, workshops and tutorials of the tidy transcriptomics☆12Updated 5 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last week
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆40Updated 5 months ago
- Package to calculate functional similarity between genes https://biocor.llrs.dev☆14Updated 6 months ago