bartongroup / profDGE48
Code base for profiling highly replicated differential gene expression RNA-seq.
☆11Updated 3 years ago
Alternatives and similar repositories for profDGE48:
Users that are interested in profDGE48 are comparing it to the libraries listed below
- Functional enrichment analysis of high-throughput omics data☆20Updated 4 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Explore design matrices interactively with R/Shiny☆37Updated 3 weeks ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 6 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- ☆28Updated 9 months ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 4 months ago
- A tidy interface for coverage analysis☆24Updated 5 years ago
- ☆11Updated 4 years ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated last week
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated this week
- Source code of the R packge BgeeDB to use data from the Bgee database☆16Updated 3 months ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Quick access to gene synonyms☆27Updated last week
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Tutorial to reproduce the analysis of Peixoto et al. (2015)☆9Updated 9 years ago
- My notes/usage examples for various Bioconductor packages☆15Updated 8 years ago
- the manifesto, workshops and tutorials of the tidy transcriptomics☆13Updated last week
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆43Updated 4 months ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Updated 5 months ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 3 weeks ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆20Updated last year
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 4 months ago
- HGNC Comparison of Orthology Predictions (HCOP)☆14Updated 7 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 weeks ago
- Representation and manipulation of genomic intervals☆45Updated 3 weeks ago