kangk1204 / Octopus-toolkit2
☆9Updated 4 years ago
Alternatives and similar repositories for Octopus-toolkit2:
Users that are interested in Octopus-toolkit2 are comparing it to the libraries listed below
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆23Updated 3 years ago
- ☆9Updated 5 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Updated 7 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- ☆22Updated last month
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 8 months ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Updated 4 years ago
- a set of NGS pipelines☆24Updated last week
- hands-on for NGS/SNParray CNV call trainning☆17Updated 2 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆11Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆15Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 8 months ago
- RNA-seq analysis scripts☆15Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆13Updated 8 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- HOT regions paper☆11Updated 5 years ago
- ☆10Updated 5 months ago
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated 2 weeks ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago