kangk1204 / Octopus-toolkit2Links
☆8Updated 5 years ago
Alternatives and similar repositories for Octopus-toolkit2
Users that are interested in Octopus-toolkit2 are comparing it to the libraries listed below
Sorting:
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated last month
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- a set of NGS pipelines☆24Updated last week
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- ☆9Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆15Updated 4 years ago
- interactive plots for differential expression analysis☆32Updated 2 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated 2 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated last year
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Updated 4 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- ☆10Updated 3 weeks ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- ☆23Updated 4 years ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 5 years ago
- Comprehensive Human Expressed SequenceS☆17Updated 10 months ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- ☆18Updated 6 years ago
- ☆22Updated last month
- ☆10Updated 9 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week