BioSystemsUM / propythiaLinks
Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical properties using ML.
☆34Updated 2 years ago
Alternatives and similar repositories for propythia
Users that are interested in propythia are comparing it to the libraries listed below
Sorting:
- scripts and facilities for in-silico mutagenesis with FoldX☆64Updated 5 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 8 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Feature map and function annotation of Proteins☆34Updated last year
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Code repository of "Deep generative design of RNA family sequences"☆40Updated last month
- ColabFold protocol☆57Updated last year
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- ☆74Updated last year
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆32Updated 2 years ago
- ☆54Updated 4 months ago
- Evolutionary velocity with protein language models☆94Updated last week
- Geometric deep learning of protein–DNA binding specificity☆76Updated 9 months ago
- Evolutionary conservation estimation of residues or nucleotides☆56Updated 3 years ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆108Updated 3 months ago
- ☆37Updated 5 months ago
- Generator and regressor neural networks for antimicrobial peptides☆25Updated last year
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆110Updated 3 weeks ago
- ☆36Updated 11 months ago
- Geometry-aware protein binding site predictor☆25Updated last year
- ☆44Updated last year
- ☆39Updated 4 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Set of useful HADDOCK utility scripts☆56Updated 3 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆76Updated 3 months ago
- Graph Network for protein-protein interface including language model features☆34Updated last year
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆61Updated 9 months ago
- Python package and command line tool for epitope prediction☆52Updated last year