Alternatives and similar repositories for BeEM:

Users that are interested in BeEM are comparing it to the libraries listed below

• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆34Updated last year
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆29Updated 2 weeks ago
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆41Updated last month
• KULL-Centre / _2024_cagiada_stability
  ☆61Updated 2 months ago
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆32Updated 2 years ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 8 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆38Updated last week
• SNU-CSSB / RF2-Lite
  ☆25Updated 8 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆52Updated 2 months ago
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆27Updated 2 years ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆49Updated last month
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆33Updated 2 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆81Updated 10 months ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆42Updated 11 months ago
• proteinphysiologylab / frustratometeR
  ☆34Updated 4 months ago
• JudeWells / chainsaw
  ☆31Updated 4 months ago
• bene837 / af2seq
  ☆41Updated 5 months ago
• LPDI-EPFL / topobuilder
  Parametric Building of de novo Functional Topologies
  ☆44Updated 2 years ago
• AbSciBio / igdesign
  ☆30Updated last month
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆32Updated last year
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆47Updated 2 months ago
• tymor22 / tm-vec
  ☆65Updated 4 months ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 2 months ago
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆44Updated 3 years ago
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 6 years ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆50Updated 10 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆33Updated 3 weeks ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆69Updated last month
• Kuhlman-Lab / evopro
  ☆72Updated last week
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆30Updated 6 years ago