Conversion of PDBx/mmCIF files to best effort/minimal PDB files
☆24Nov 1, 2024Updated last year
Alternatives and similar repositories for BeEM
Users that are interested in BeEM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein Structure Archiver☆15Sep 10, 2025Updated 11 months ago
- ☆17Nov 11, 2022Updated 3 years ago
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆36Nov 18, 2023Updated 2 years ago
- ☆13Apr 18, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Transformer for protein function prediction☆34Oct 24, 2024Updated last year
- Full-length protein structure determination from cryo-EM maps using deep learning☆15May 28, 2023Updated 3 years ago
- ☆17Jul 7, 2024Updated 2 years ago
- DomainMapper is a parser for hmmscan full output files built centrally around ECOD domain definitions. Users can optimize DomainMapper's …☆13Dec 13, 2023Updated 2 years ago
- Transformer for protein function prediction (version 2)☆14Updated this week
- PDB ProtVista Viewer☆11Aug 9, 2026Updated 3 weeks ago
- Representation learning for protein functional site analysis☆17Aug 11, 2023Updated 3 years ago
- ☆15Jul 14, 2025Updated last year
- Protein Annotation by Residue-Specific Enrichment: a site-based statistical method for interpretable protein function annotation☆16Jun 16, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A course on population genetics☆17Apr 28, 2026Updated 4 months ago
- Autoregressive networks for protein☆38Feb 27, 2025Updated last year
- ☆40Sep 17, 2024Updated last year
- Read, write and manipulate atomic systems in PDB and mmCIF formats☆21Updated this week
- "Fast and accurate protein stoichiometry prediction"☆15Mar 20, 2026Updated 5 months ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆40Jul 25, 2024Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. ape — Analyses of Phylogenetics and Evolution. Homepage: https://github.co…☆12Dec 16, 2024Updated last year
- ☆19Aug 24, 2026Updated last week
- AngularJS filters wrapping the 'humanize' library☆10Jul 30, 2015Updated 11 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Nov 7, 2025Updated 9 months ago
- Making Protein Language Modeling Accessible to All Biologists☆169Updated this week
- ☆33Feb 27, 2026Updated 6 months ago
- A deep learning framework for essential gene prediction☆12Aug 17, 2020Updated 6 years ago
- ☆28Oct 31, 2022Updated 3 years ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆33Jan 17, 2023Updated 3 years ago
- Effect of tokenization on transformers for biological sequence☆23Dec 31, 2025Updated 8 months ago
- pKa estimates for proteins using an ensemble approach☆31Jul 24, 2026Updated last month
- ML toolset for creating TED: The Encyclopedia of Domains☆28May 29, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆10Nov 10, 2023Updated 2 years ago
- ☆31Oct 20, 2023Updated 2 years ago
- Detect, analyze, and visualize protein symmetry☆32Dec 19, 2025Updated 8 months ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆52Aug 18, 2026Updated 2 weeks ago
- Metal and Water prediction☆16Feb 5, 2025Updated last year
- ☆40Dec 16, 2022Updated 3 years ago
- Differentiable Pairing using Alignment-based Language Models☆27Jan 5, 2024Updated 2 years ago