Alternatives and similar repositories for af_analysis

Users that are interested in af_analysis are comparing it to the libraries listed below

• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆63Updated 3 months ago
• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆34Updated last month
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆32Updated 7 years ago
• Jfeldman34 / AF3Complex
  ☆30Updated 3 weeks ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆60Updated 2 weeks ago
• wells-wood-research / drMD
  Molecular Dynamics for Experimentalists
  ☆58Updated last week
• tubiana / protocolGromacs
  Automatic gromacs protocol from preparation to production with ligand parametrization through
  ☆70Updated 3 months ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆63Updated 3 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆83Updated last month
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆63Updated 5 months ago
• t03i / FlatProt
  A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.
  ☆15Updated 2 weeks ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆67Updated 10 months ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆59Updated last year
• danny305 / MutComputeX
  ☆23Updated last year
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆55Updated 8 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆29Updated last week
• bunzela / AIzymes
  ☆37Updated 2 weeks ago
• LAnAlchemist / Pseudocycle_small_molecule_binder
  Small_molecule_binder_design_use_pseudocycles
  ☆18Updated 7 months ago
• Kuhlman-Lab / evopro
  ☆81Updated last month
• gfzhou / OpenVS
  Codes and scripts for "An artificial intelligence accelerated virtual screening platform for drug discovery"
  ☆56Updated 7 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• abeebyekeen / CHAPERONg
  CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses
  ☆49Updated 6 months ago
• maranasgroup / CatPred
  Machine Learning models for in vitro enzyme kinetic parameter prediction
  ☆49Updated 3 months ago
• lcbc-epfl / metal-site-prediction
  ☆39Updated last year
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆61Updated 7 months ago
• dina-lab3D / CombFold
  ☆84Updated 9 months ago
• regeneron-mpds / propermab
  ☆28Updated 3 months ago
• patrickbryant1 / MoLPC
  Modelling of Large Protein Complexes
  ☆37Updated last year
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆27Updated 2 months ago
• iriziotis / Uniprot-PDB-mapper
  Quick mapping of Uniprot sequences to PDB structures
  ☆32Updated 3 months ago