Alternatives and similar repositories for af_analysis

Users that are interested in af_analysis are comparing it to the libraries listed below

• cytokineking / FreeBindCraft
  BindCraft modified to make PyRosetta use and installation optional: no license needed
  ☆108Updated 3 weeks ago
• Jfeldman34 / AF3Complex
  ☆52Updated 6 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆49Updated 2 months ago
• LAnAlchemist / Pseudocycle_small_molecule_binder
  Small_molecule_binder_design_use_pseudocycles
  ☆23Updated last year
• PapenfussLab / proteindj
  Official repository for the ProteinDJ protein design pipeline
  ☆76Updated last week
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆85Updated 2 weeks ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆35Updated 7 years ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆60Updated 3 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆54Updated 4 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• dina-lab3D / CombFold
  ☆88Updated last year
• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆38Updated 6 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆86Updated 6 months ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆37Updated 2 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆64Updated 10 months ago
• lcbc-epfl / metal-site-prediction
  ☆41Updated last year
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆32Updated last year
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆84Updated 2 months ago
• Kuhlman-Lab / evopro
  ☆93Updated 2 months ago
• rigdenlab / ABCFold
  Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.
  ☆99Updated this week
• regeneron-mpds / propermab
  ☆42Updated 8 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆68Updated 5 months ago
• patrickbryant1 / MoLPC
  Modelling of Large Protein Complexes
  ☆39Updated 4 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆62Updated 3 weeks ago
• bene837 / af2seq
  ☆46Updated last year
• cryoEM-CNIO / BinderFlow
  Code for running BinderFlow
  ☆54Updated last month
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆42Updated last year
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆43Updated 7 months ago
• cddlab / alphafold3_tools
  Toolkit for alphafold3 input and output files
  ☆96Updated this week
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆76Updated 2 months ago