A mirror of official bio3d development site at Bitbucket: https://bitbucket.org/Grantlab/bio3d. See also bio3d website: http://thegrantlab.org/bio3d
☆28Apr 30, 2023Updated 3 years ago
Alternatives and similar repositories for bio3d
Users that are interested in bio3d are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Dec 4, 2021Updated 4 years ago
- ☆21Aug 16, 2019Updated 6 years ago
- Normal Mode Analysis for Macromolecules☆18Apr 1, 2017Updated 9 years ago
- Tautomer ratios in solution☆28Sep 20, 2021Updated 4 years ago
- scripts for analyzing molecular dynamics trajectories using VMD☆40May 28, 2015Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ELViM is a method for visualizing the energy landscapes of biomolecules simulations.☆13Aug 18, 2025Updated 8 months ago
- Python code to automatically interact with PDBePISA web server☆10Jun 27, 2022Updated 3 years ago
- Membrane protein builder and parameterizer☆19Sep 1, 2024Updated last year
- A pipeline to do virtual screening☆10Oct 4, 2023Updated 2 years ago
- Contact map analysis for biomolecules; based on MDTraj☆48Jan 25, 2026Updated 3 months ago
- parKVFinder-win: thread-level parallel KVFinder for Windows☆10Sep 12, 2024Updated last year
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- Optimization tool for calibrating coarse-grained force fields of lipids, relying on the simultaneous usage of reference AA trajectories (…☆10Jun 6, 2023Updated 2 years ago
- A protein active site alignment tool☆10Nov 24, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Real time monitoring and visualization of Amber MD simulations☆17Feb 6, 2020Updated 6 years ago
- demo on how to create a pip and anaconda package from scratch☆14Oct 6, 2020Updated 5 years ago
- A parallel molecular docking program based on AutoDock Vina☆19Sep 29, 2025Updated 7 months ago
- ChEMBL Similarity Search☆19Nov 28, 2020Updated 5 years ago
- 🛜 An interactive browser for the VDJdb database☆15Apr 30, 2026Updated last week
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- De novo design of small molecule binding sites into proteins☆12Apr 14, 2021Updated 5 years ago
- ☆11Dec 20, 2023Updated 2 years ago
- B-cell repertoire and clonal family tree explorer☆17May 1, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres☆16Oct 2, 2024Updated last year
- Design platform for creating single-chain polyhedral cages made from coiled-coil building modules☆23Oct 12, 2017Updated 8 years ago
- Open Source, Mostly just clicking mouse to finish a simulation with Ambertools and OpenMM. It was designed to use locally but another not…☆37Apr 27, 2025Updated last year
- ☆23Aug 25, 2023Updated 2 years ago
- DeepAlign: the protein structure analysis toolkit☆41Jan 2, 2020Updated 6 years ago
- A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations☆13Nov 30, 2023Updated 2 years ago
- ☆17Apr 28, 2020Updated 6 years ago
- RDKit中文教程☆16Jun 21, 2020Updated 5 years ago
- Automated omics-scale protein modeling and simulation setup.☆53Sep 20, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Sep 25, 2025Updated 7 months ago
- Resources for Learning Cheminformatics with the RDKit☆19Apr 7, 2019Updated 7 years ago
- Computing the Committor with the Committor: an Anatomy of the Transition State Ensemble☆14Jul 12, 2024Updated last year
- DyNoPy☆11Sep 5, 2024Updated last year
- PeriHub is a platform that provides a numerical implementation of the peridynamic theory. It is an extension of the open source PeriLab s…☆18May 1, 2026Updated last week
- Protein surface topographical mapping tool☆30Aug 17, 2023Updated 2 years ago
- ☆14Feb 28, 2022Updated 4 years ago