Pappulab / LASSILinks
LASSI - Lattice Simulation Engine For Stickers And Spacer Interactions
☆17Updated 6 months ago
Alternatives and similar repositories for LASSI
Users that are interested in LASSI are comparing it to the libraries listed below
Sorting:
- localCIDER - sequence analysis tool for disordered protein sequences☆24Updated 2 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆57Updated this week
- Interactive Python notebooks for PDBe API training☆55Updated 3 weeks ago
- ☆85Updated last year
- The Integrative Modeling Platform☆76Updated last week
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆72Updated last year
- Direct coupling analysis software for protein and RNA sequences☆50Updated 2 months ago
- The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…☆79Updated last year
- Framework for the rapid modeling glycans and glycoproteins.☆30Updated last year
- MDMS: Molecular Dynamics Made Simple; Python program facilitating performing Molecular Dynamics simulations of proteins☆26Updated 5 years ago
- PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.☆80Updated 4 months ago
- Use UCSF Chimera Python API in a standard interpreter☆58Updated 6 years ago
- Source code for "Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome inter…☆12Updated 3 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆101Updated 2 months ago
- An open-source library for the analysis of protein interactions.☆29Updated 3 years ago
- ☆15Updated 2 years ago
- Pymol ScrIpt COllection (PSICO)☆60Updated 3 weeks ago
- Analysis and figure code from Alley et al. 2019.☆59Updated 2 years ago
- An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM☆36Updated last month
- Software for biomolecular electrostatics and solvation calculations☆106Updated 10 months ago
- Automated omics-scale protein modeling and simulation setup.☆53Updated 3 years ago
- The DSSP building software☆44Updated last year
- Source code and examples for AlphaFold Unmasked☆71Updated last month
- A simple Python library to generate model peptides☆87Updated 4 years ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆99Updated 3 months ago
- Set of useful HADDOCK utility scripts☆53Updated 10 months ago
- Python library for calculting synergy of drug combinations using several drug synergy frameworks☆36Updated 8 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆105Updated 11 months ago
- qFit: Automated and unbiased multi-conformer models from X-ray and EM maps.☆45Updated 3 weeks ago