Alternatives and similar repositories for genet:

Users that are interested in genet are comparing it to the libraries listed below

• hkimlab / DeepPrime
  Source codes and examples for DeepPrime
  ☆13Updated last month
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆99Updated 5 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆111Updated last month
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆19Updated 10 months ago
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆32Updated last year
• hexavier / CUSTOM
  Codon optimizer for tissue-specific expression
  ☆15Updated 4 months ago
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆38Updated 3 months ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆55Updated 4 years ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆37Updated 6 months ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆35Updated last year
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated 11 months ago
• Arcadia-Science / ProteinCartography
  a pipeline to build similarity maps of protein space
  ☆30Updated last month
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆30Updated 3 weeks ago
• clairemcwhite / vcmsa
  ☆29Updated last year
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆32Updated 3 months ago
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆33Updated this week
• Merck / bgc-pipeline
  ☆11Updated last month
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆11Updated 2 weeks ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 2 years ago
• lingxusb / megaDNA
  ☆47Updated 3 months ago
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆132Updated last week
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆47Updated last month
• wds-seu / DeepGene
  ☆16Updated 8 months ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆30Updated 7 months ago
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆26Updated last week
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆51Updated 6 months ago
• Lattice-Automation / primers
  A PCR primer tool for DNA assembly flows
  ☆30Updated 9 months ago
• steineggerlab / afdb-clusters-analysis
  Scripts to generate and analyze afdb clusters
  ☆11Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆23Updated last year
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆39Updated 3 weeks ago