BD2KGenomics / toil-rnaseqLinks
UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline
☆41Updated 5 years ago
Alternatives and similar repositories for toil-rnaseq
Users that are interested in toil-rnaseq are comparing it to the libraries listed below
Sorting:
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- GTEx Visualizations☆65Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Fast fusion detection using kallisto☆79Updated 4 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- ☆33Updated 3 years ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆41Updated 3 weeks ago
- Cloud-based single-cell copy-number variation analysis tool☆52Updated 2 years ago
- 3D hotspot mutation proximity analysis tool☆48Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- ☆72Updated 2 years ago
- Differential analysis for ChIP-seq with biological replicates☆35Updated 3 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- ☆69Updated 3 years ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago