EvanBaugh / VIPUR
A method for identifying deleterious protein variation.
☆11Updated 8 years ago
Alternatives and similar repositories for VIPUR:
Users that are interested in VIPUR are comparing it to the libraries listed below
- ☆14Updated 9 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- ☆22Updated 4 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆34Updated last year
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆2Updated last year
- Python interface to amino acid properties and IEDB☆56Updated 5 months ago
- A package for making tree-based visualizations for embedding vectors☆9Updated 2 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- ☆13Updated 6 years ago
- An algorithm for error-correction of immunosequencing Illumina MiSeq reads and immunoproteogenomic analysis☆18Updated 6 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆31Updated 2 years ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Updated last year
- Practical Introduction to Bioinformatics and Systems Biology with R (mainly)☆19Updated 15 years ago
- Open source short linear motif discovery and sequence analysis☆23Updated 6 months ago
- Shepherd: accurate clustering for correcting DNA barcode errors: https://doi.org/10.1093/bioinformatics/btac395☆10Updated last year
- iCodon customizes gene expression based on the codon composition☆14Updated last year
- A genome browser in your Jupyter notebook☆30Updated 3 months ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆26Updated this week
- Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"☆13Updated 6 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Metagenomic search for novel CRISPR-transposons☆12Updated 3 years ago
- Python package to plot sequence logos☆29Updated last year
- http://www.combio.pl/alfree☆23Updated 2 years ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 7 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆58Updated last week
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆35Updated 7 years ago