Benchmarking and metadata tracking. CLI and Python integration. Extensible, with distributed/cluster support.
☆20Jul 11, 2026Updated last week
Alternatives and similar repositories for microbench
Users that are interested in microbench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dose response curves and DIP rates for cell proliferation data in Python☆16Jul 13, 2026Updated last week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- Parameter estimation and model calibration using Genetic Algorithm optimization in Python.☆12Aug 16, 2024Updated last year
- Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.☆26May 12, 2021Updated 5 years ago
- Python framework for Systems Biology modeling☆198May 19, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This is the repository for the 2021 uq-bio Summer School☆13May 9, 2022Updated 4 years ago
- Biostatistics 6301: Introduction to Statistical Computing☆14Aug 15, 2024Updated last year
- SODECL is a library of ordinary differential equation (ODE) and stochastic differential equation (SDE) solvers in OpenCL.☆11Jul 4, 2020Updated 6 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)☆12Oct 24, 2024Updated last year
- Terraform Provider for Talos☆23Apr 12, 2023Updated 3 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Marker Enrichment Modeling (MEM)☆13Nov 22, 2021Updated 4 years ago
- NumFocus Academy - Matplotlib (beginner)☆57Aug 17, 2021Updated 4 years ago
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Sep 22, 2023Updated 2 years ago
- 2nd Annual Undergraduate Quantitative Biology (UQ-bio) Summer School☆17Jun 14, 2022Updated 4 years ago
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 4 years ago
- ☆17Jun 17, 2021Updated 5 years ago
- StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.☆17Jun 9, 2020Updated 6 years ago
- ☆15Aug 1, 2021Updated 4 years ago
- PDF and notebooks of GUDHI presentation @ NIPS 2017☆15Jan 22, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15May 30, 2023Updated 3 years ago
- An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated☆30Nov 2, 2024Updated last year
- Software (with Kivy GUI) for semi-automated segmentation and analysis of birdsongs or other acoustic signals.☆16Jan 22, 2020Updated 6 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- MT-DREAM(ZS) algorithm for model optimization, calibration, selection☆58Mar 14, 2026Updated 4 months ago
- Workflow to generate interactive feature selection report for cross-sectional or longitudinal studies☆11Apr 3, 2026Updated 3 months ago
- Smoldyn is a particle-based biochemical simulator for modeling molecular diffusion, surface interactions, and chemical reactions☆31Jul 10, 2026Updated last week
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Jul 16, 2025Updated last year
- Learning disentangled representations of single-cell data for high-quality generation☆16Mar 16, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆21Jan 24, 2025Updated last year
- Tools for Batch Effects Diagnostics and Correction☆17Apr 25, 2025Updated last year
- Toolkit for calling and analyzing de novo STR mutations☆17Dec 17, 2023Updated 2 years ago
- A Reproducible Untargeted Metabolomics Data Processing Pipeline☆11Mar 18, 2021Updated 5 years ago
- Python code for basic bootstrap resampling statistics (paper J Physiol. 2012 August 1; 590(Pt 15): 3403–3406)☆18Oct 9, 2017Updated 8 years ago
- The website for bioboxes☆11Jun 9, 2017Updated 9 years ago
- GitHub Action to add reviewer(s) to a pull request.☆12Apr 23, 2024Updated 2 years ago