Benchmarking and metadata tracking. CLI and Python integration. Extensible, with distributed/cluster support.
☆20Apr 26, 2026Updated last month
Alternatives and similar repositories for microbench
Users that are interested in microbench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dose response curves and DIP rates for cell proliferation data in Python☆16Jun 3, 2026Updated last week
- Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.☆26May 12, 2021Updated 5 years ago
- Python framework for Systems Biology modeling☆197May 19, 2026Updated 3 weeks ago
- SODECL is a library of ordinary differential equation (ODE) and stochastic differential equation (SDE) solvers in OpenCL.☆11Jul 4, 2020Updated 5 years ago
- Biostatistics 6301: Introduction to Statistical Computing☆14Aug 15, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Essential Python skills for using transformers on Colab☆11May 13, 2022Updated 4 years ago
- Genome scale metabolic models in SBML format☆11Nov 16, 2021Updated 4 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- NumFocus Academy - Matplotlib (beginner)☆56Aug 17, 2021Updated 4 years ago
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Sep 22, 2023Updated 2 years ago
- StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.☆17Jun 9, 2020Updated 6 years ago
- ☆15Aug 1, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Unified environment and Issue tracker for all IBL☆17Mar 19, 2026Updated 2 months ago
- An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated☆29Nov 2, 2024Updated last year
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 4 years ago
- ☆13Dec 20, 2025Updated 5 months ago
- ☆31Oct 19, 2016Updated 9 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- ☆17Jun 17, 2021Updated 4 years ago
- Pynocular is a lightweight ORM that lets you query your database using Pydantic models and asyncio☆11May 24, 2022Updated 4 years ago
- MT-DREAM(ZS) algorithm for model optimization, calibration, selection☆58Mar 14, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- pathway and network analysis for metabolomics☆44Dec 8, 2025Updated 6 months ago
- Marker Enrichment Modeling (MEM)☆12Nov 22, 2021Updated 4 years ago
- Learning disentangled representations of single-cell data for high-quality generation☆16Mar 16, 2024Updated 2 years ago
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated 4 months ago
- Smoldyn is a particle-based biochemical simulator for modeling molecular diffusion, surface interactions, and chemical reactions☆30May 23, 2026Updated 2 weeks ago
- Toolkit for calling and analyzing de novo STR mutations☆17Dec 17, 2023Updated 2 years ago
- Tools for Batch Effects Diagnostics and Correction☆17Apr 25, 2025Updated last year
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- 2nd Annual Undergraduate Quantitative Biology (UQ-bio) Summer School☆16Jun 14, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Create cwl workflows by writing a simple Python script☆40Apr 29, 2020Updated 6 years ago
- GitHub Action to add reviewer(s) to a pull request.☆12Apr 23, 2024Updated 2 years ago
- LIME-like explanations with interpretable features based on Ceteris Paribus curves. Now on CRAN.☆14Sep 19, 2021Updated 4 years ago
- A Complete Github Repository with all required resources to start learning to program with Flutter/Dart and develop awesome Mobile/Web/De…☆17Jul 28, 2022Updated 3 years ago
- ☆16Mar 15, 2020Updated 6 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Nov 17, 2021Updated 4 years ago
- ☆21Jan 24, 2025Updated last year