Alternatives and similar repositories for pystackreg:

Users that are interested in pystackreg are comparing it to the libraries listed below

• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆54Updated 2 years ago
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆142Updated last month
• peng-lab / BaSiCPy
  ☆68Updated 2 months ago
• clij / clij2-fft
  ☆22Updated this week
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆82Updated last week
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆81Updated 2 months ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆61Updated last week
• pyapp-kit / ndv
  Simple, fast-loading, n-dimensional array viewer with minimal dependencies.
  ☆57Updated this week
• clEsperanto / napari_pyclesperanto_assistant
  GPU-accelerated general purpose image processing and image analysis in napari
  ☆35Updated 3 months ago
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆50Updated 4 months ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated last year
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆61Updated this week
• vanvalenlab / deepcell-tracking
  Track cells and build cell lineages
  ☆32Updated 6 months ago
• clEsperanto / pyclesperanto_prototype
  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
  ☆217Updated 4 months ago
• sakoho81 / miplib
  A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.
  ☆75Updated 3 years ago
• deepimagej / deepimagej-plugin
  The ImageJ plugin to run deep-learning models
  ☆90Updated this week
• lens-biophotonics / ZetaStitcher
  ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
  ☆40Updated 5 months ago
• micro-manager / pymmcore
  Python bindings for MMCore, Micro-Manager's device control layer
  ☆33Updated 3 weeks ago
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆35Updated 5 months ago
• tlambert03 / nd2
  Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
  ☆57Updated last week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆37Updated 5 months ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆103Updated this week
• haesleinhuepf / I2K2022-napari-workshop
  ☆16Updated 2 years ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated 2 months ago
• clij / clij2
  GPU-accelerated image processing for everyone
  ☆50Updated 7 months ago
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆54Updated 2 weeks ago
• haesleinhuepf / napari-assistant
  ☆24Updated 2 months ago
• haesleinhuepf / napari-workflow-optimizer
  Optimize image processing workflows in napari
  ☆17Updated 2 years ago
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆34Updated last week
• marrlab / BaSiC
  A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
  ☆55Updated 3 years ago