A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.
☆98Oct 20, 2024Updated last year
Alternatives and similar repositories for pystackreg
Users that are interested in pystackreg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆245Aug 14, 2026Updated 2 weeks ago
- ☆14Jan 27, 2024Updated 2 years ago
- ☆116Updated this week
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆23Aug 6, 2025Updated last year
- Cookiecutter for napari plugins☆72Nov 6, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- A GPU and CPU accelerated python package for aligning tomography datasets.☆15Apr 8, 2026Updated 4 months ago
- ☆23May 1, 2025Updated last year
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆258Updated this week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Dec 1, 2025Updated 9 months ago
- Graphic User Interface for Deep learning to make it used easily,让深度学习算法触手可及、一键调用☆19Sep 4, 2022Updated 3 years ago
- an ImageJ toolset for EM image analysis☆15Jun 25, 2024Updated 2 years ago
- Bayesian multi-object tracking☆335Apr 1, 2026Updated 5 months ago
- A napari plugin for making animations☆96Aug 25, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- OpenECCI is a Python library for Electron Channelling Contrast Imaging (ECCI) analysis of crystal defects in Scanning Electron Microscope…☆23May 20, 2024Updated 2 years ago
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 5 months ago
- A library to facilitate machine learning on multi-dimensional images.☆93Aug 3, 2026Updated 3 weeks ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 9 months ago
- ☆12Jan 10, 2021Updated 5 years ago
- Cuda/C++ library for Regularized 2D and 3D Tomography Reconstructions.☆24Aug 28, 2025Updated last year
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆41Updated this week
- Joint training of denoising and segmentation.☆76Aug 29, 2023Updated 3 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆39Apr 8, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆24May 16, 2023Updated 3 years ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Aug 24, 2026Updated last week
- ☆14Dec 18, 2024Updated last year
- Utility functions for large-scale bio-image analysis.☆64Jul 1, 2026Updated 2 months ago
- End-to-end model for cell segmentation and classification☆23Jan 13, 2025Updated last year
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆184Jul 30, 2026Updated last month
- VISION is a sophisticated software tool specifically designed to analyze and process biological and microscopic images.☆10Jul 25, 2024Updated 2 years ago
- Segment Anything for Microscopy☆715Updated this week
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Modified version of MultiStackRegistration, for use from scripts.☆12May 18, 2022Updated 4 years ago
- [DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan☆14May 13, 2020Updated 6 years ago
- ☆35Dec 22, 2024Updated last year
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆21Mar 14, 2021Updated 5 years ago
- Advanced Tool for Labeling And Segmentation☆41Oct 21, 2024Updated last year
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆59May 20, 2024Updated 2 years ago
- Cell tracking and segmentation software☆206Aug 13, 2026Updated 2 weeks ago