glichtner / pystackreg
A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.
☆85Updated 3 months ago
Alternatives and similar repositories for pystackreg:
Users that are interested in pystackreg are comparing it to the libraries listed below
- Accelerated Pixel and Object Classifiers (APOC)☆54Updated 2 years ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆142Updated this week
- ☆23Updated this week
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 3 months ago
- A napari plugin for clustering objects according to their properties.☆82Updated this week
- Cookiecutter for napari plugins☆69Updated 3 months ago
- A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.☆75Updated 3 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 2 months ago
- A napari plugin for making animations☆84Updated 5 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆61Updated 2 weeks ago
- ☆21Updated last year
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆34Updated 2 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆60Updated this week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 5 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 4 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆70Updated 2 months ago
- Use ImageJ functionality from napari☆27Updated 3 weeks ago
- StarDist plugin for napari☆37Updated 5 months ago
- ☆68Updated 2 months ago
- GPU-accelerated image processing for everyone☆50Updated 7 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆20Updated last month
- General-purpouse camera capture plugin for data streaming to napari☆23Updated 11 months ago
- A self-supervised denoising algorithm.☆24Updated 10 months ago
- The python-microscopy environment - an open-source package for light microscopy☆86Updated last week
- A library to facilitate machine learning on multi-dimensional images.☆81Updated 2 months ago
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- ☆24Updated 2 months ago
- native Python dataclasses for the OME data model☆55Updated 2 weeks ago
- Python bindings for MMCore, Micro-Manager's device control layer☆33Updated last month