A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.
☆97Oct 20, 2024Updated last year
Alternatives and similar repositories for pystackreg
Users that are interested in pystackreg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆244Apr 24, 2026Updated 2 months ago
- ☆14Jan 27, 2024Updated 2 years ago
- ☆116Jul 10, 2026Updated last week
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆23Aug 6, 2025Updated 11 months ago
- Cookiecutter for napari plugins☆73Nov 6, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- A GPU and CPU accelerated python package for aligning tomography datasets.☆15Apr 8, 2026Updated 3 months ago
- ☆23May 1, 2025Updated last year
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆249Updated this week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 7 months ago
- Graphic User Interface for Deep learning to make it used easily,让深度学习算法触手可及、一键调用☆19Sep 4, 2022Updated 3 years ago
- an ImageJ toolset for EM image analysis☆15Jun 25, 2024Updated 2 years ago
- Bayesian multi-object tracking☆334Apr 1, 2026Updated 3 months ago
- A napari plugin for making animations☆96Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- OpenECCI is a Python library for Electron Channelling Contrast Imaging (ECCI) analysis of crystal defects in Scanning Electron Microscope…☆23May 20, 2024Updated 2 years ago
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 3 months ago
- A library to facilitate machine learning on multi-dimensional images.☆91Jul 6, 2026Updated 2 weeks ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 7 months ago
- ☆12Jan 10, 2021Updated 5 years ago
- Cuda/C++ library for Regularized 2D and 3D Tomography Reconstructions.☆23Aug 28, 2025Updated 10 months ago
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆41Updated this week
- Joint training of denoising and segmentation.☆76Aug 29, 2023Updated 2 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆39Apr 8, 2026Updated 3 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆24May 16, 2023Updated 3 years ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Updated this week
- ☆14Dec 18, 2024Updated last year
- Utility functions for large-scale bio-image analysis.☆64Jul 1, 2026Updated 3 weeks ago
- End-to-end model for cell segmentation and classification☆23Jan 13, 2025Updated last year
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆182Jan 17, 2026Updated 6 months ago
- VISION is a sophisticated software tool specifically designed to analyze and process biological and microscopic images.☆10Jul 25, 2024Updated last year
- Segment Anything for Microscopy☆701Updated this week
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Modified version of MultiStackRegistration, for use from scripts.☆12May 18, 2022Updated 4 years ago
- [DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan☆14May 13, 2020Updated 6 years ago
- ☆35Dec 22, 2024Updated last year
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆21Mar 14, 2021Updated 5 years ago
- Advanced Tool for Labeling And Segmentation☆41Oct 21, 2024Updated last year
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆57May 20, 2024Updated 2 years ago
- Cell tracking and segmentation software☆199Jul 15, 2026Updated last week