glichtner / pystackregLinks
A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.
☆93Updated last year
Alternatives and similar repositories for pystackreg
Users that are interested in pystackreg are comparing it to the libraries listed below
Sorting:
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆176Updated last week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆102Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- A napari plugin for clustering objects according to their properties.☆89Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated 3 weeks ago
- A napari plugin for making animations☆94Updated 3 weeks ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆79Updated last year
- GPU-accelerated general purpose image processing and image analysis in napari☆36Updated 8 months ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆238Updated 11 months ago
- Cookiecutter for napari plugins☆71Updated last year
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆64Updated 10 months ago
- Particle tracking by solving linear assignment problem.☆61Updated last month
- ImgLib2/BDV implementation of Stitching for large datasets☆78Updated 2 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 8 months ago
- The python-microscopy environment - an open-source package for light microscopy☆95Updated 2 weeks ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 9 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆89Updated last week
- Acquire: a multi-camera video streaming software focusing on microscopy☆23Updated last year
- ☆33Updated 8 months ago
- Linking napari layers with Matplotlib plots☆42Updated 3 weeks ago
- Multi-Object Tracker using Integer Linear Equations☆38Updated last month
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆88Updated 2 weeks ago
- Tools for distributed alignment of massive images☆92Updated 2 weeks ago
- Read and write ImageJ ROI format.☆83Updated last week
- 1d plotting in napari-based canvas.☆25Updated this week
- StarDist plugin for napari☆38Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆38Updated this week