glichtner / pystackregLinks
A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.
☆92Updated last year
Alternatives and similar repositories for pystackreg
Users that are interested in pystackreg are comparing it to the libraries listed below
Sorting:
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆174Updated 7 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 5 months ago
- GPU-accelerated general purpose image processing and image analysis in napari☆36Updated 8 months ago
- A napari plugin for clustering objects according to their properties.☆88Updated 2 weeks ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated last month
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆99Updated 2 weeks ago
- Particle tracking by solving linear assignment problem.☆61Updated last month
- A napari plugin for making animations☆89Updated this week
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆64Updated 9 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 8 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 8 months ago
- Linking napari layers with Matplotlib plots☆42Updated last week
- Cookiecutter for napari plugins☆71Updated last year
- A collection of useful python utilities from True North Intelligent Algorithms☆43Updated 3 weeks ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆238Updated 10 months ago
- StarDist plugin for napari☆38Updated last year
- Multi-Object Tracker using Integer Linear Equations☆38Updated 2 weeks ago
- ☆20Updated 8 months ago
- ☆33Updated 8 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 10 months ago
- 1d plotting in napari-based canvas.☆25Updated 2 weeks ago
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆26Updated 5 years ago
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- ImgLib2/BDV implementation of Stitching for large datasets☆78Updated 2 months ago
- Read and write ImageJ ROI format.☆83Updated 3 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 8 months ago
- GPU-accelerated Image Processing library for Python☆52Updated this week
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆87Updated this week