mhe / pynrrdLinks
Simple pure-python module for reading and writing nrrd files.
☆124Updated 11 months ago
Alternatives and similar repositories for pynrrd
Users that are interested in pynrrd are comparing it to the libraries listed below
Sorting:
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆260Updated last week
- Utilities for reading and writing files created by 3D Slicer☆41Updated 11 months ago
- DICOM to Nifti conversion with meta data preservation☆77Updated last year
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆173Updated last month
- Multi-lingual medical image registration library☆533Updated 2 years ago
- A setup script to generate ITK Python Wheels☆63Updated this week
- A project to provide custom sorting and renaming of dicom files☆83Updated 7 months ago
- This extension makes available Elastix medical image registration toolkit (http://elastix.isi.uu.nl/) available in Slicer.☆55Updated 4 months ago
- An image analysis workflow for open and reproducible research on femoral knee cartilage☆33Updated last year
- Thin wrapper around elastix - a toolbox for rigid and nonrigid registration of images☆109Updated 5 years ago
- ☆89Updated last year
- Very fast greedy diffeomorphic registration code☆82Updated 7 months ago
- Build, package, test, and run 3D Slicer and Slicer Extensions in Docker.☆67Updated last week
- Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python☆78Updated 3 years ago
- Chest Imaging Platform (CIP)☆59Updated 2 months ago
- ☆387Updated 6 months ago
- High-level DICOM abstractions for the Python programming language☆215Updated 3 weeks ago
- Extension for 3D Slicer that allows the application to be used from Jupyter notebook☆258Updated last year
- Kitware Course in Biomedical Image Analysis and Visualization: ITK☆39Updated 7 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 3 years ago
- Official elastix repository☆548Updated last week
- Official SuperElastix repository☆88Updated 6 years ago
- Pre-trained models and utilities for deep learning on medical images in Python (Keras/TensorFlow)☆240Updated 3 weeks ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆182Updated last month
- Properly generate a 3D numpy array from a set of DICOM files.☆95Updated 2 years ago
- The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core librarie…☆199Updated 10 months ago
- Python package for DICOM-SEG medical segmentation file reading and writing☆85Updated 2 years ago
- DCE MRI analysis in Julia☆38Updated 4 years ago
- Convert 3D NIfTI images (and other formats supported by ITK) to DICOM 2D series☆89Updated 9 years ago
- Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.☆22Updated 7 months ago