tix209 / SOAXLinks
2D/3D biopolymer network extraction and quantification.
☆16Updated 4 months ago
Alternatives and similar repositories for SOAX
Users that are interested in SOAX are comparing it to the libraries listed below
Sorting:
- A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolution☆15Updated last year
- Automated quantification of fibrous networks☆12Updated 11 months ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆187Updated 2 weeks ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆53Updated last year
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆57Updated 7 months ago
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …☆55Updated 2 months ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆75Updated 4 years ago
- An implementation of morphological contour interpolation☆34Updated 2 months ago
- Repository for Vesselness algorithms☆50Updated 3 months ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- Ranking Operator Response of Path Openings☆29Updated last month
- An open-source application for the analysis and visualization of segmented vasculature datasets☆128Updated last year
- Fast global mutual information-based rigid alignment in the Fourier domain☆32Updated last year
- Image analysis approaches to analyze the OAI magnetic resonance images☆27Updated last year
- Biomedisa is a free and open-source application for segmenting 3D images such as CT and MRI scans, developed at The Australian National U…☆57Updated last week
- nnInteractive plugin for Napari - nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points,…☆104Updated 3 months ago
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels…☆50Updated 2 years ago
- A Fiji plugin for Curvature Analysis.☆13Updated 5 years ago
- Perform image registration of 2D and 3D volumes using state-of-the-art deformable registration.☆23Updated 6 years ago
- 3D segmention tool☆13Updated 2 years ago
- Official SuperElastix repository☆88Updated 6 years ago
- Fast, Texture Feature Maps from N-Dimensional Images☆25Updated 2 months ago
- A collection of tools for the analysis of biological data☆12Updated 9 years ago
- An ITK module to compute 3D thickness☆42Updated 2 months ago
- ☆30Updated last year
- ☆18Updated 3 years ago
- Vascular Tree Synthesis Software. You will need CMake and ITK to run VascuSynth. Read the paper in the Insight Journal for instructions…☆12Updated 8 years ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆261Updated last month
- Very fast greedy diffeomorphic registration code☆83Updated last month
- semantic segmentation for magnetic resonance imaging☆16Updated 4 years ago