Alternatives and similar repositories for SOAX

Users that are interested in SOAX are comparing it to the libraries listed below

• theia-dev / Qiber3D
  Automated quantification of fibrous networks
  ☆12Updated 4 months ago
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆47Updated last year
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆72Updated 3 years ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆15Updated 2 years ago
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆55Updated 2 weeks ago
• seung-lab / fastmorph
  Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.
  ☆17Updated last week
• MIDA-group / inspire
  INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration
  ☆12Updated 3 years ago
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated 2 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆56Updated last week
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆22Updated 7 months ago
• KitwareMedical / ITKContourInterpolation
  An implementation of morphological contour interpolation
  ☆33Updated last week
• JacobBumgarner / VesselVio
  An open-source application for the analysis and visualization of segmented vasculature datasets
  ☆115Updated last year
• visionlyx / HP-VSP
  A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolution
  ☆14Updated last year
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆38Updated last year
• MIC-DKFZ / napari-nninteractive
  ☆77Updated last week
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆21Updated 2 years ago
• mhaft / DeepVess
  ☆29Updated last year
• uncbiag / OAI_analysis_2
  Image analysis approaches to analyze the OAI magnetic resonance images
  ☆26Updated 6 months ago
• MIDA-group / globalign
  Fast global mutual information-based rigid alignment in the Fourier domain
  ☆32Updated 10 months ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆69Updated 2 years ago
• path-openings / RORPO
  Ranking Operator Response of Path Openings
  ☆29Updated last year
• RoysamLab / Farsight-toolkit
  A collection of tools for the analysis of biological data
  ☆12Updated 9 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• khaledkhairy / EM_aligner
  A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.
  ☆13Updated 6 years ago
• urakubo / UNI-EM
  A unified environment for DNN-based automated segmentation of neuronal EM images
  ☆37Updated 9 months ago
• Project-MONAI / MetricsReloaded
  ☆86Updated 3 weeks ago
• InsightSoftwareConsortium / ITKTubeTK
  TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …
  ☆54Updated 3 months ago
• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆14Updated last year
• RENCI / Segmentor
  3D segmention tool
  ☆13Updated 2 years ago
• natalie11 / tUbeNet
  CNN for segmenting vasculature
  ☆14Updated last week