tix209 / SOAX
2D/3D biopolymer network extraction and quantification.
☆14Updated 2 years ago
Alternatives and similar repositories for SOAX:
Users that are interested in SOAX are comparing it to the libraries listed below
- Automated quantification of fibrous networks☆11Updated 2 months ago
- A collection of tools for the analysis of biological data☆12Updated 9 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆15Updated 3 weeks ago
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆54Updated last month
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆47Updated 11 months ago
- INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration☆12Updated 3 years ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆147Updated last week
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated 2 years ago
- Repository for Vesselness algorithms☆47Updated 11 months ago
- Python TEASAR Skeletonization for Sparse Labels☆9Updated last year
- Distributed segmentation for bio-image-analysis☆37Updated this week
- A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolution☆12Updated last year
- Command line tool for registration of very large 3D volumes.☆14Updated last year
- Simple watershed and agglomeration library for affinity graphs.☆22Updated 5 months ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆70Updated 3 years ago
- 2D image registration in python, using napari.☆16Updated 3 years ago
- MorphoFeatures code and data☆21Updated 2 years ago
- ☆65Updated this week
- Utils and convenience functions for large-scale bio-image analysis.☆54Updated last week
- Fill holes in binary 2D & 3D images fast.☆20Updated 2 months ago
- An implementation of morphological contour interpolation☆33Updated 2 weeks ago
- Ranking Operator Response of Path Openings☆28Updated last year
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Fast global mutual information-based rigid alignment in the Fourier domain☆29Updated 9 months ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- An open-source application for the analysis and visualization of segmented vasculature datasets☆111Updated 11 months ago
- ☆29Updated last year
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆67Updated 2 years ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆12Updated 6 years ago
- A Fiji plugin for Curvature Analysis.☆13Updated 4 years ago