tix209 / SOAX
2D/3D biopolymer network extraction and quantification.
☆12Updated 2 years ago
Alternatives and similar repositories for SOAX:
Users that are interested in SOAX are comparing it to the libraries listed below
- Automated quantification of fibrous networks☆11Updated 6 months ago
- A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolution☆11Updated 8 months ago
- A Fiji plugin for Curvature Analysis.☆13Updated 4 years ago
- Repository for Vesselness algorithms☆44Updated 7 months ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆65Updated 3 years ago
- An image analysis workflow for open and reproducible research on femoral knee cartilage☆32Updated 6 months ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆43Updated 7 months ago
- An implementation of morphological contour interpolation☆30Updated 4 months ago
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆53Updated this week
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …☆48Updated 6 months ago
- Fast, Texture Feature Maps from N-Dimensional Images☆22Updated 6 months ago
- INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration☆11Updated 3 years ago
- ☆18Updated 2 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated last year
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆142Updated 5 months ago
- Utilities for reading and writing files created by 3D Slicer☆34Updated 4 months ago
- Spatial Graph Extractor. Library and scripts to study graphs extracted from binary images, or to generate graphs and analyze them complet…☆5Updated 7 months ago
- Ranking Operator Response of Path Openings☆26Updated last year
- The Biomedical Image Segmentation App is a free and open-source application for segmenting 3D images such as CT and MRI scans, developed …☆51Updated this week
- This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.☆32Updated 8 months ago
- Python TEASAR Skeletonization for Sparse Labels☆9Updated last year
- 3D Slicer module for TorchIO.☆20Updated 8 months ago
- Image analysis approaches to analyze the OAI magnetic resonance images☆22Updated 3 weeks ago
- A setup script to generate ITK Python Wheels☆64Updated 2 months ago
- ITK Image IO for Scanco MicroCT .ISQ files☆13Updated 6 months ago
- Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python☆74Updated 2 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆66Updated 2 years ago
- Implementation of the DeepVesselNet deep learning network☆143Updated last year
- An ITK module to compute 3D thickness☆42Updated 4 months ago