tix209 / SOAX
2D/3D biopolymer network extraction and quantification.
☆12Updated 2 years ago
Alternatives and similar repositories for SOAX:
Users that are interested in SOAX are comparing it to the libraries listed below
- Automated quantification of fibrous networks☆11Updated this week
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆54Updated 3 weeks ago
- A napari plugin for itk-elastix☆38Updated 8 months ago
- 3D segmention tool☆13Updated last year
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆44Updated 8 months ago
- An implementation of morphological contour interpolation☆31Updated 2 weeks ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆66Updated 3 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated last year
- Vascular Tree Synthesis Software. You will need CMake and ITK to run VascuSynth. Read the paper in the Insight Journal for instructions…☆12Updated 7 years ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆29Updated last month
- Fast global mutual information-based rigid alignment in the Fourier domain☆29Updated 6 months ago
- A Fiji plugin for Curvature Analysis.☆13Updated 4 years ago
- Spatial Graph Extractor. Library and scripts to study graphs extracted from binary images, or to generate graphs and analyze them complet…☆5Updated 3 weeks ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆145Updated last month
- A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolution☆12Updated 9 months ago
- Ranking Operator Response of Path Openings☆27Updated last year
- Utils and convenience functions for large-scale bio-image analysis.☆51Updated last week
- GPU-accelerated Image Processing library for C++☆14Updated this week
- FluoRender is an interactive tool for confocal microscopy data analysis.☆42Updated this week
- ☆18Updated 2 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing.☆13Updated this week
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆12Updated 5 years ago
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- 2D image registration in python, using napari.☆16Updated 3 years ago
- Aligner for large scale serial section image data☆15Updated last year
- A collection of tools for the analysis of biological data☆11Updated 8 years ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆37Updated 3 months ago
- Python TEASAR Skeletonization for Sparse Labels☆9Updated last year
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆66Updated 2 years ago
- Distributed segmentation for bio-image-analysis☆36Updated 7 months ago