a customizable protein feature visualization tool
☆18Apr 5, 2023Updated 2 years ago
Alternatives and similar repositories for Protter
Users that are interested in Protter are comparing it to the libraries listed below
Sorting:
- Membrane protein builder and parameterizer☆19Sep 1, 2024Updated last year
- To explain clinical BERT model predictions, we present an approach which leverages integrated gradients to attribute events in medical re…☆11Jul 30, 2025Updated 7 months ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Jan 15, 2021Updated 5 years ago
- python simulation interface for molecular modeling. To cite this software publication: https://www.sciencedirect.com/science/article/pii/…☆13Aug 24, 2016Updated 9 years ago
- Calcium imaging inter-session alignment☆16Dec 18, 2025Updated 2 months ago
- Public version for DistPepFold☆10Jul 17, 2025Updated 7 months ago
- OPUS-Rota4: A Gradient-Based Protein Side-Chain Modeling Framework Assisted by Deep Learning-Based Predictors☆11Apr 14, 2022Updated 3 years ago
- sailVina用于Linux的反向对接脚本☆10Feb 14, 2021Updated 5 years ago
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Sep 18, 2025Updated 5 months ago
- ☆40Aug 31, 2021Updated 4 years ago
- Convert Intan (rhd or rhs) files to NWB file format☆10Oct 2, 2023Updated 2 years ago
- Benchmarking tools for JupyterLab☆12Jun 11, 2023Updated 2 years ago
- Semiautomated layout of RNA tertiary structure diagrams☆14Feb 26, 2025Updated last year
- ☆10Apr 16, 2020Updated 5 years ago
- Force Fields☆14Oct 25, 2022Updated 3 years ago
- High Dimensional Discriminant Analysis in R☆11Jul 11, 2019Updated 6 years ago
- to assess structural quality of RNA using 3D CNN☆13Aug 17, 2018Updated 7 years ago
- ☆13Jan 12, 2024Updated 2 years ago
- A domain-specific language that allows the expression or protein interactions that can be used to build executable models.☆23Dec 13, 2022Updated 3 years ago
- Nested Dichotomy Logistic Regression Models☆10Updated this week
- ActiveDriverDB☆12May 1, 2023Updated 2 years ago
- R package for metabolic enzyme enrichment anaylsis☆13Oct 24, 2025Updated 4 months ago
- Material for the RNAseq course☆10Aug 8, 2019Updated 6 years ago
- code related to Shirvalkar et al. 2023 - Nature Neuroscience☆10May 22, 2023Updated 2 years ago
- Coarse-graining library that implements Force-matching☆11Aug 31, 2020Updated 5 years ago
- Python based Graphical User Interface for generating input files for and running molecular dynamic simulation.☆10Aug 27, 2024Updated last year
- ☆10Nov 27, 2023Updated 2 years ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 3 years ago
- Proof-of-principle studies with conditional generative adversarial networks to denoise Cryo-EM images☆10Oct 11, 2018Updated 7 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Use Thor's Axe to cut exons into their evolutionary building blocks☆12Feb 3, 2026Updated 3 weeks ago
- Extension for profiling performance of JupyterLab UI for JupyterLab core developers, extension developers, and advanced users.☆14Updated this week
- PhosIDN: an integrated deep neural network for improving protein phosphorylation site prediction by combining sequence and protein–protei…☆12Nov 30, 2020Updated 5 years ago
- Example files for Colvars module: https://github.com/Colvars/colvars☆13Dec 7, 2021Updated 4 years ago
- A hybrid deep learning framework for toxicity prediction☆16Jan 14, 2026Updated last month
- Open-source ImageJ plugin to quantify cardiomyocyte and cardiac muscle contraction in vitro and in vivo☆15Apr 16, 2021Updated 4 years ago
- Plugin to UCSF Chimera for segmenting Cryo-EM density maps☆11Dec 18, 2024Updated last year
- Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics☆14Oct 27, 2023Updated 2 years ago
- Sparse Fourier Backpropagation in Cryo-EM Reconstruction☆12Dec 3, 2023Updated 2 years ago