Alternatives and similar repositories for DNABERT_S:

Users that are interested in DNABERT_S are comparing it to the libraries listed below

• MAGICS-LAB / DNABERT_2
  [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
  ☆334Updated 2 months ago
• ychuest / Awesome-LLMs-meet-genomes
  Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…
  ☆30Updated last week
• ML-Bioinfo-CEITEC / genomic_benchmarks
  Benchmarks for classification of genomic sequences
  ☆132Updated last year
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆122Updated 2 months ago
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆93Updated 3 months ago
• a96123155 / UTR-LM
  ☆73Updated 4 months ago
• frederikkemarin / BEND
  Benchmarking DNA Language Models on Biologically Meaningful Tasks
  ☆104Updated 3 months ago
• songlab-cal / gpn
  Genomic Pre-trained Network
  ☆237Updated last week
• ntranoslab / esm-variants
  ☆72Updated last year
• d-laub / basenji2-pytorch
  PyTorch implementation of Basenji2.
  ☆15Updated last year
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆55Updated last month
• lingxusb / megaDNA
  ☆47Updated 4 months ago
• kundajelab / DART-Eval
  ☆27Updated last month
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆166Updated 11 months ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆97Updated 2 years ago
• amberT15 / LLM_eval
  Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"
  ☆17Updated 7 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆83Updated 2 weeks ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆72Updated last year
• TencentAILabHealthcare / DNAGPT
  ☆37Updated last year
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆122Updated 2 weeks ago
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆26Updated 3 weeks ago
• lingxusb / Riboformer
  ☆18Updated 11 months ago
• CompEpigen / methylbert
  A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution
  ☆24Updated last month
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆219Updated last month
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆73Updated last month
• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆83Updated 3 months ago
• Illumina / PrimateAI-3D
  ☆64Updated 7 months ago
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆245Updated this week
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆50Updated 9 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆100Updated 5 months ago