MAGICS-LAB / DNABERT_S
DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models
☆93Updated last month
Alternatives and similar repositories for DNABERT_S:
Users that are interested in DNABERT_S are comparing it to the libraries listed below
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆350Updated 3 months ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆39Updated this week
- Benchmarks for classification of genomic sequences☆138Updated last week
- Genomic Pre-trained Network☆254Updated last week
- RNA-seq prediction with deep convolutional neural networks.☆133Updated this week
- ☆71Updated last year
- The official implementation of GenomeOcean.☆27Updated this week
- code to run sei and obtain sei and sequence class predictions☆99Updated 2 years ago
- ☆19Updated last year
- ☆32Updated this week
- Multi-class signal peptide prediction and structure decoding model.☆83Updated last month
- ☆39Updated last year
- Computational Optimization of DNA Activity (CODA)☆56Updated 2 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆93Updated 3 weeks ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆17Updated 9 months ago
- ☆27Updated 2 months ago
- Genomic language model predicts protein co-regulation and function☆73Updated last week
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆109Updated 4 months ago
- Logan Unitigs and Contigs☆124Updated last week
- PyTorch implementation of Basenji2.☆15Updated 3 weeks ago
- ☆51Updated 5 months ago
- ☆78Updated 5 months ago
- Fast and flexible ORF finder☆69Updated 3 years ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆34Updated last year
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆251Updated this week
- ☆20Updated last month
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆167Updated last year
- ☆65Updated last month
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆64Updated 3 weeks ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆73Updated 8 months ago