Build DeepSea training dataset from raw data
☆32Jul 6, 2023Updated 3 years ago
Alternatives and similar repositories for build-deepsea-training-dataset
Users that are interested in build-deepsea-training-dataset are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆27Jun 26, 2024Updated 2 years ago
- ☆14Jan 23, 2025Updated last year
- DeepSEA implements in PyTorch☆25Jun 5, 2019Updated 7 years ago
- ☆12Feb 6, 2023Updated 3 years ago
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- LLM for genomic☆14Feb 23, 2024Updated 2 years ago
- Tabula Rasa Tic-Tac-Toe☆10Jan 3, 2019Updated 7 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆48Apr 1, 2025Updated last year
- code to run sei and obtain sei and sequence class predictions☆118Dec 20, 2022Updated 3 years ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- Codebase for the domain adaptation (cross-species TF binding prediction) project.☆12Aug 29, 2022Updated 4 years ago
- Rank binders by structure modeling☆17Apr 10, 2026Updated 6 months ago
- DeepATT, a hybrid deep neural network method for identifying functional effects of DNA sequences.☆28Oct 18, 2022Updated 3 years ago
- Repository for code and models for the paper "Extrapolative Controlled Sequence Generation via Iterative Refinement"☆16Mar 5, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14Feb 3, 2025Updated last year
- Sequential regulatory activity predictions with deep convolutional neural networks.☆475Jan 15, 2026Updated 8 months ago
- FlashRNA - An Efficient Model for Regulatory Genomics☆19Oct 15, 2025Updated 11 months ago
- ☆37Jan 27, 2025Updated last year
- ☆39Feb 2, 2023Updated 3 years ago
- ☆17Sep 2, 2019Updated 7 years ago
- Nature Methods: RNA foundation model (together with RhoFold)☆392May 27, 2025Updated last year
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆30Feb 21, 2023Updated 3 years ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Aug 4, 2026Updated 2 months ago
- ☆25Oct 2, 2026Updated last week
- ☆25Aug 20, 2024Updated 2 years ago
- [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling☆10Sep 22, 2024Updated 2 years ago
- MayaChemTools is a growing collection of Perl and Python scripts, modules, and classes to support a variety of day-to-day computational d…☆10Sep 1, 2020Updated 6 years ago
- Machine learning methods for DNA sequence analysis.☆66Sep 30, 2026Updated last week
- Data repository for pkasolver☆13Mar 28, 2022Updated 4 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆24Jan 8, 2025Updated last year
- Rapid and accurate ancestry inference using SNVs.☆30Aug 15, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆31May 11, 2026Updated 5 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆99Jun 10, 2026Updated 4 months ago
- Must-read papers on AI for Biology☆29Oct 4, 2023Updated 3 years ago
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆164Jan 14, 2017Updated 9 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- Pangenome analysis using random forests☆16Dec 9, 2025Updated 10 months ago
- ☆10Mar 6, 2023Updated 3 years ago