Alternatives and similar repositories for build-deepsea-training-dataset:

Users that are interested in build-deepsea-training-dataset are comparing it to the libraries listed below

• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆116Updated last month
• amberT15 / LLM_eval
  Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"
  ☆17Updated 7 months ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆53Updated 2 weeks ago
• kundajelab / DART-Eval
  ☆25Updated last month
• ni-lab / personalized-expression-benchmark
  Evaluating genomic sequence models for explaining personalized expression variation
  ☆19Updated last year
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆34Updated last year
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆78Updated 2 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆35Updated last year
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆96Updated 2 years ago
• Genentech / regLM
  Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.
  ☆35Updated 3 months ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆163Updated 10 months ago
• MedChaabane / DeepBind-with-PyTorch
  CNN architecture for predicting DNA binding sites for Transcription Factors
  ☆50Updated 5 years ago
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆26Updated this week
• ntranoslab / esm-variants
  ☆70Updated last year
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆34Updated 2 months ago
• kipoi / kipoiseq
  Standard set of data-loaders for training and making predictions for DNA sequence-based models.
  ☆81Updated 4 months ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆33Updated 3 months ago
• TencentAILabHealthcare / DNAGPT
  ☆35Updated last year
• 1edv / evolution
  This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
  ☆94Updated last year
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆115Updated last year
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆48Updated 2 years ago
• chenkenbio / SpliceBERT
  Primary RNA sequence model
  ☆32Updated 8 months ago
• Genentech / polygraph
  Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …
  ☆28Updated 3 weeks ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆68Updated 6 months ago
• frederikkemarin / BEND
  Benchmarking DNA Language Models on Biologically Meaningful Tasks
  ☆102Updated 2 months ago
• zj-zhang / AMBER
  Automated Modelling for Biological Evidence-based Research
  ☆44Updated last year
• d-laub / basenji2-pytorch
  PyTorch implementation of Basenji2.
  ☆15Updated last year
• kuixu / PrismNet
  Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure
  ☆60Updated 10 months ago
• smaslova / AI-TAC
  ☆26Updated last year
• jmschrei / tfmodisco-lite
  A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
  ☆65Updated 6 months ago