Alternatives and similar repositories for build-deepsea-training-dataset

Users that are interested in build-deepsea-training-dataset are comparing it to the libraries listed below

• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆36Updated 2 years ago
• evanseitz / squid-nn
  surrogate quantitative interpretability for deepnets
  ☆24Updated last month
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• frederikkemarin / BEND
  Benchmarking DNA Language Models on Biologically Meaningful Tasks
  ☆124Updated 10 months ago
• Genentech / regLM
  Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.
  ☆46Updated 11 months ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆60Updated 5 months ago
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆40Updated last year
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆66Updated 3 years ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆123Updated 7 months ago
• MedChaabane / DeepBind-with-PyTorch
  CNN architecture for predicting DNA binding sites for Transcription Factors
  ☆52Updated 6 years ago
• kundajelab / DART-Eval
  ☆41Updated last month
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆56Updated 3 years ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆181Updated last year
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆41Updated 2 months ago
• Sanofi-Public / CodonBERT
  Repository for mRNA Paper and CodonBERT publication.
  ☆134Updated last year
• 1edv / evolution
  This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
  ☆95Updated 2 years ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆49Updated last year
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆51Updated 6 years ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆46Updated 2 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆88Updated 7 months ago
• chenkenbio / SpliceBERT
  Primary RNA sequence model
  ☆38Updated last year
• johli / genesis
  Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences
  ☆30Updated 3 years ago
• ihh / bilby
  Jax code for functional genomics ML
  ☆14Updated 6 months ago
• microsoft / zero-shot-scfoundation
  ☆72Updated last year
• ntranoslab / esm-variants
  ☆78Updated last year
• amberT15 / LLM_eval
  Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"
  ☆22Updated last year
• kexinhuang12345 / ml-genomics-resources
  Machine Learning for Genomics and Therapeutics Resources (Cell Patterns)
  ☆80Updated 3 years ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆27Updated last month
• krishnanlab / obnb
  A Python toolkit for setting up benchmarking dataset using biomedical networks
  ☆22Updated 3 weeks ago