Alternatives and similar repositories for indelphi-dataprocessinganalysis

Users that are interested in indelphi-dataprocessinganalysis are comparing it to the libraries listed below

• alexfields / ORF-RATER
  Regression-based annotation of protein-coding sequences from ribosome profiling data
  ☆31Updated 4 years ago
• andrewrech / antigen.garnish
  ☆48Updated 2 years ago
• mhorlbeck / ScreenProcessing
  ☆64Updated last year
• xryanglab / RiboMiner
  a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
  ☆18Updated 4 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆38Updated this week
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆63Updated 9 months ago
• immunoengineer / gliph
  Grouping of Lymphocyte Interactions by Paratope Hotspots
  ☆92Updated 4 years ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆78Updated last year
• YeoLab / eCLIP
  ☆37Updated 2 years ago
• Weeks-UNC / shapemapper2
  Public repository for ShapeMapper 2 releases
  ☆35Updated 6 months ago
• pwilmart / TMT_analysis_examples
  Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
  ☆22Updated 3 years ago
• GuoBioinfoLab / CATT
  An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
  ☆21Updated last year
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆25Updated 3 weeks ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆34Updated 3 years ago
• Hughes-Genome-Group / deepC
  A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence
  ☆33Updated last year
• brianpenghe / Bio-Jobs
  A list of positions (mostly biology-related) open to apply
  ☆35Updated last month
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆53Updated 4 years ago
• hbc / NGS_Data_Analysis_Course
  ☆23Updated 8 years ago
• Tong-Chen / NGS
  Scripts for next generation sequencing
  ☆48Updated 5 years ago
• phbradley / tcr-dist
  Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
  ☆84Updated 3 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆43Updated 2 years ago
• izhangcd / DeepHF
  Core code for the DeepHF prediction tool
  ☆36Updated 5 years ago
• gexijin / idepGolem
  ☆38Updated last week
• fengzhanglab / Screening_Protocols_manuscript
  Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening
  ☆50Updated 7 years ago
• ntranoslab / esm-variants
  ☆74Updated last year
• skrakau / PureCLIP
  Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
  ☆30Updated 3 years ago
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆63Updated 2 years ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆105Updated 2 years ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆59Updated 2 months ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆80Updated 2 years ago