cancerit / BRASSLinks
Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.
☆57Updated last year
Alternatives and similar repositories for BRASS
Users that are interested in BRASS are comparing it to the libraries listed below
Sorting:
- Tumor Mutational Burden☆62Updated last week
- ☆78Updated 11 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 9 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆54Updated 4 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆63Updated 3 months ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated 9 months ago
- My bioinfo toolbox☆50Updated 6 months ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆82Updated 2 years ago
- Characterization of Germline variants☆98Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- ☆70Updated 2 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- ☆69Updated 3 years ago
- BISulfite-seq CUI Toolkit☆65Updated 6 months ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- ⛏ HLA predictions from NGS shotgun data☆54Updated 2 months ago
- Ultraperformant reimplementation of SICER☆57Updated 3 years ago