cancerit / BRASSLinks
Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.
☆57Updated last year
Alternatives and similar repositories for BRASS
Users that are interested in BRASS are comparing it to the libraries listed below
Sorting:
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Characterization of Germline variants☆98Updated 3 years ago
- ☆71Updated 2 years ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆63Updated 4 months ago
- Precision HLA typing from next-generation sequencing data☆71Updated last month
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Tumor Mutational Burden☆61Updated last month
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 6 months ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Relevant papers for CNV and SV approaches☆94Updated 9 months ago
- QDNAseq package for Bioconductor☆50Updated last year
- Burden testing against public controls☆50Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 10 months ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 5 years ago
- ☆78Updated 11 years ago
- Battenberg R package for subclonal copynumber estimation☆91Updated last month
- ☆21Updated last week
- ⛏ HLA predictions from NGS shotgun data☆54Updated 2 months ago
- This repo is archived, these workflows will be housed in the GATK repository under the scripts directory. These workflows are also organi…☆44Updated 5 years ago