cancerit / BRASSLinks
Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.
☆57Updated 11 months ago
Alternatives and similar repositories for BRASS
Users that are interested in BRASS are comparing it to the libraries listed below
Sorting:
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Tumor Mutational Burden☆61Updated 10 months ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- ☆78Updated 11 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Precision HLA typing from next-generation sequencing data☆69Updated last week
- ☆69Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 8 months ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆63Updated 2 months ago
- Characterization of Germline variants☆98Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆61Updated 3 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Burden testing against public controls☆50Updated last year
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- ☆68Updated 3 years ago
- ☆50Updated 4 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Battenberg R package for subclonal copynumber estimation☆88Updated last week