cancerit / BRASSLinks
Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.
☆57Updated last year
Alternatives and similar repositories for BRASS
Users that are interested in BRASS are comparing it to the libraries listed below
Sorting:
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Tumor Mutational Burden☆61Updated last month
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- Precision HLA typing from next-generation sequencing data☆71Updated last month
- BISulfite-seq CUI Toolkit☆66Updated 8 months ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆63Updated 4 months ago
- ☆78Updated 11 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Burden testing against public controls☆50Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- QDNAseq package for Bioconductor☆51Updated last year
- ☆72Updated 2 years ago
- Copy number vaiation detection from SNP arrays☆96Updated last year
- Relevant papers for CNV and SV approaches☆94Updated 10 months ago
- Workflows for converting between sequence data formats☆39Updated 4 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Characterization of Germline variants☆98Updated 3 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆73Updated last year