erolkavvas / metabolic-allele-classifiers
A flux balance analysis machine learning classifier for microbial GWAS
☆14Updated 5 years ago
Alternatives and similar repositories for metabolic-allele-classifiers:
Users that are interested in metabolic-allele-classifiers are comparing it to the libraries listed below
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 7 years ago
- ☆23Updated 2 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆26Updated 7 years ago
- ☆19Updated 4 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆29Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆29Updated last year
- A Python package for gene network analysis☆32Updated 2 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆34Updated last year
- Python package for analyzing and visualizing iModulons☆13Updated 2 weeks ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆53Updated last year
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- A Python interface to the Ensembl REST APIs, biological data at your fingertips.☆12Updated last year
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 2 years ago
- A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)☆19Updated 4 months ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 5 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago