erolkavvas / metabolic-allele-classifiers
A flux balance analysis machine learning classifier for microbial GWAS
☆14Updated 5 years ago
Alternatives and similar repositories for metabolic-allele-classifiers:
Users that are interested in metabolic-allele-classifiers are comparing it to the libraries listed below
- ☆22Updated 2 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 7 years ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆28Updated 11 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 7 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆26Updated 6 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆28Updated 9 months ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆32Updated 6 months ago
- User-submitted RNA-seq data analysis tools for BioJupies.☆19Updated 3 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 5 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago
- 🎨 Python library to plot multi-part genetic constructs☆25Updated last year
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Updated 5 years ago
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆28Updated 2 years ago
- Python interface to amino acid properties and IEDB☆55Updated 3 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆26Updated 2 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- Reconstruction algorithms for Python☆23Updated 3 months ago
- Repository of tutorials for The COBRA Toolbox☆19Updated 2 months ago
- Library of Integrated Cellular Signatures L1000☆30Updated 2 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 3 months ago
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆25Updated last year
- Connect the dots in networks.☆18Updated 4 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- Example usage of the Benchling API: https://docs.benchling.com/☆31Updated 10 months ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆34Updated last year