Alternatives and similar repositories for metabolic-allele-classifiers

Users that are interested in metabolic-allele-classifiers are comparing it to the libraries listed below

• saramasarone / enrich_omics
  A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
  ☆19Updated 11 months ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 3 years ago
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• broadinstitute / lincs-cell-painting
  Processed Cell Painting Data for the LINCS Drug Repurposing Project
  ☆30Updated 3 years ago
• p-koo / deepomics
  deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
  ☆22Updated 2 years ago
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• SBRG / MASSpy
  ☆25Updated 2 years ago
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆44Updated 3 months ago
• sysbio-curie / Neko
  ☆16Updated last month
• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆28Updated 2 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• mfitzp / padua
  Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)
  ☆24Updated 2 years ago
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆34Updated last year
• EPFL-LCSB / skimpy
  Symbolic Kinetic Models with Python
  ☆32Updated 4 months ago
• SBRG / pymodulon
  Python package for analyzing and visualizing iModulons
  ☆13Updated 2 weeks ago
• TeoSakel / deep-drug-response
  ☆19Updated 5 years ago
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• zj-zhang / AMBER
  Automated Modelling for Biological Evidence-based Research
  ☆47Updated last year
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆56Updated 2 years ago
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆27Updated 8 years ago
• dreamtools / dreamtools
  Code sharing related to DREAM challenges
  ☆23Updated 8 years ago
• ChengF-Lab / GPSnet
  ☆34Updated 6 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆31Updated 7 years ago
• metaspace2020 / metaspace
  Cloud engine and platform for metabolite annotation for imaging mass spectrometry
  ☆52Updated last week
• ISA-tools / mzml2isa
  Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure
  ☆12Updated last year
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆41Updated 7 months ago
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated 7 months ago