erolkavvas / metabolic-allele-classifiers
A flux balance analysis machine learning classifier for microbial GWAS
☆14Updated 5 years ago
Alternatives and similar repositories for metabolic-allele-classifiers:
Users that are interested in metabolic-allele-classifiers are comparing it to the libraries listed below
- ☆19Updated 4 years ago
- A Data-Driven Approach to Predicting Successes and Failures of Clinical Trials☆18Updated 5 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆28Updated 11 months ago
- Code for the analyses in the human reference interactome paper.☆26Updated 2 years ago
- ☆22Updated 2 years ago
- A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)☆19Updated 3 months ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆28Updated last year
- A 3-Dimensional View of Human Metabolism and Disease☆26Updated 7 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 7 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- A Python package for gene network analysis☆32Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆23Updated 11 months ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- A platform to do RNA science☆27Updated 4 years ago
- Arnie-based DegScore tool.☆25Updated 2 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆23Updated last year
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆27Updated 2 years ago
- Python package and command line tool for epitope prediction☆51Updated 7 months ago
- Machine learning workflows for analyzing high-throughput protein data☆24Updated 8 years ago
- User-submitted RNA-seq data analysis tools for BioJupies.☆19Updated 3 years ago
- ☆34Updated 6 years ago
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆26Updated last year
- Library of Integrated Cellular Signatures L1000☆31Updated 2 years ago