ggRibo: Ribo-seq periodicity and other single-nucleotide resolution visualizer
☆14Jul 17, 2026Updated 3 months ago
Alternatives and similar repositories for ggRibo
Users that are interested in ggRibo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RiboPlotR package for Ribo-plot☆16Jun 12, 2025Updated last year
- ☆38Updated this week
- A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.☆22May 25, 2026Updated 4 months ago
- A project to develop the R Shiny applications.☆12May 13, 2019Updated 7 years ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆16Sep 16, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- repDNA is a Python package to generate various features of DNA sequences incorporating physicochemical properties and sequence-order effe…☆14Jul 16, 2022Updated 4 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆26May 30, 2023Updated 3 years ago
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 6 years ago
- scripts used in Rice Pangenome Projects (Evolution).☆16Oct 29, 2023Updated 2 years ago
- Analysis and Visualization of Ribosome Profiling Data☆32Aug 29, 2025Updated last year
- A copy of RiboTaper v1.2☆10Mar 14, 2021Updated 5 years ago
- End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning☆26Jan 23, 2020Updated 6 years ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆26Apr 30, 2018Updated 8 years ago
- ☆17Mar 3, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- MSU Themed LaTeX Templates for presentations, posters, cover letters, etc.☆22Oct 26, 2020Updated 5 years ago
- release version☆63Jul 29, 2022Updated 4 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆43Sep 30, 2026Updated 2 weeks ago
- Deep learning the cis-regulatory code for gene expression in selected model plants☆28Mar 15, 2024Updated 2 years ago
- Create equal-area histograms with 'ggplot2'☆10Jul 23, 2023Updated 3 years ago
- ☆25Updated this week
- High throughput python tool for mining and analysis of gene duplications.☆17Jul 30, 2026Updated 2 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆54Oct 21, 2025Updated 11 months ago
- an R package for deep mining gene co-expression networks in multi-trait expression data☆26Jan 23, 2026Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Improved Ribo-seq enables identification of cryptic translation events☆17Feb 13, 2018Updated 8 years ago
- CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.☆12Jan 15, 2021Updated 5 years ago
- heatmap3 is an improved heatmap package. It is completely compatible with the original R function heatmap, and provides some more powerfu…☆11Sep 2, 2021Updated 5 years ago
- Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.☆11Mar 25, 2026Updated 6 months ago
- Plots three different color schemes on the top-left and bottom-right triangles and the diagonal of a symmetric matrix☆11Jul 11, 2021Updated 5 years ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.☆38Oct 8, 2026Updated last week
- python plotly Circos☆10Feb 2, 2024Updated 2 years ago
- data frames that print as ggplots☆14Oct 13, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Divergence time estimation in the complex history of gene family evolution☆11Updated this week
- Colour and fill scales for 'ggplot2' using colour spaces.☆15Apr 28, 2026Updated 5 months ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆15Updated this week
- This is the software for FAst Marginal Epistasis test (FAME)☆14Jul 21, 2026Updated 2 months ago
- Cython bindings and Python interface to Jess, a 3D template matching software for protein structures. Now 10x faster!☆12Aug 25, 2026Updated last month
- A minimal TUI system monitor for zellij/tmux☆18Jun 19, 2026Updated 3 months ago
- http://research-pub.gene.com/IMvigor210CoreBiologies/☆12Jun 10, 2024Updated 2 years ago