holab-hku / FlowGrid
Ultra-fast clustering of very large single cell RNA-seq data
☆10Updated 3 years ago
Alternatives and similar repositories for FlowGrid:
Users that are interested in FlowGrid are comparing it to the libraries listed below
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆14Updated 2 months ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- ☆12Updated 2 years ago
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- ☆12Updated 4 years ago
- ☆19Updated 3 years ago
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆21Updated 4 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- ☆25Updated 5 years ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆13Updated 7 years ago
- ☆31Updated 5 years ago
- ☆17Updated 2 years ago
- An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data☆16Updated 4 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆14Updated 3 years ago
- ☆15Updated 7 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆21Updated last month
- ☆24Updated 4 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆26Updated 3 years ago
- ☆13Updated 4 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆37Updated 3 years ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆8Updated 3 years ago
- ☆49Updated 5 years ago
- ☆15Updated 3 years ago
- ☆21Updated 8 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆29Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago