hbc / NGS_Data_Analysis_CourseLinks
☆23Updated 9 years ago
Alternatives and similar repositories for NGS_Data_Analysis_Course
Users that are interested in NGS_Data_Analysis_Course are comparing it to the libraries listed below
Sorting:
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆97Updated 4 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- ☆38Updated 3 years ago
- ☆67Updated 2 years ago
- A continually expanding collection of cancer genomics notes and data☆109Updated last month
- ☆49Updated 3 years ago
- R package to access DoRothEA's regulons☆153Updated last year
- published papers with a lot of data☆74Updated 7 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆125Updated 2 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆147Updated last year
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Updated implementation of the GSEA-P R application for modern R distributions☆97Updated 3 years ago
- Code related to the Celligner manuscript☆46Updated 5 years ago
- Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.☆31Updated 2 years ago
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆78Updated 2 weeks ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆52Updated 2 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆32Updated 4 years ago
- ☆42Updated last week
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆132Updated last year
- coding exercise using TCGA immune infiltration data☆46Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆159Updated 2 weeks ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆122Updated last month
- ☆62Updated 5 years ago
- Alternative splicing resource☆57Updated 7 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆31Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆96Updated 6 years ago
- My youtube programming scripts☆58Updated 10 months ago