genomics-dev / ukb-pretLinks
☆33Updated 7 months ago
Alternatives and similar repositories for ukb-pret
Users that are interested in ukb-pret are comparing it to the libraries listed below
Sorting:
- Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform☆69Updated 3 months ago
- PrediXcan Project☆112Updated 2 years ago
- Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DN…☆195Updated last year
- MetaXcan software and manuscript☆173Updated 2 months ago
- UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).☆117Updated 2 months ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆149Updated last month
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆70Updated 4 years ago
- Source code of FUMA GWAS web application☆58Updated last year
- Cross-population polygenic prediction☆90Updated 9 months ago
- ☆90Updated last year
- Polygenic prediction via continuous shrinkage priors☆189Updated 9 months ago
- Genotype-based Prediction (GenoPred)☆73Updated this week
- A tutorial on how to run basic polygenic risk score analysis☆81Updated 2 years ago
- ☆22Updated 2 years ago
- Causal Mixture Model for GWAS summary statistics☆83Updated this week
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 4 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆53Updated 4 months ago
- Data analysis scripts for "Atlas of plasma NMR biomarkers for health and disease in 118,461 individuals from the UK Biobank".☆14Updated 2 years ago
- A GPU version of SAIGE for full GRM GWAS analysis☆18Updated last month
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆199Updated last year
- GREP: Genome for REPositioning drugs☆43Updated 2 years ago
- GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comp…☆29Updated 3 weeks ago
- A tool to build a website to browse hundreds or thousands of GWAS.☆185Updated last week
- Meta-analysis of genomewide association scans☆60Updated last year
- Easily download publicly available GWAS summary statistics.☆76Updated last year
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆124Updated 9 months ago
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆29Updated last year
- Fine-tuning polygenic risk score models using GWAS summary statistics☆52Updated 6 months ago
- R package for quality control of plink genetic datasets☆59Updated last week
- Partners Biobank genomics data QC☆30Updated 5 years ago