astheeggeggs / PHESANTLinks
PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
☆19Updated 3 years ago
Alternatives and similar repositories for PHESANT
Users that are interested in PHESANT are comparing it to the libraries listed below
Sorting:
- Hypothesis Prioritisation in multi-trait Colocalization☆54Updated last year
- ☆72Updated last week
- High-definition likelihood inference of genetic correlations (HDL)☆122Updated 2 months ago
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆55Updated 4 years ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆34Updated 2 months ago
- R script to make Manhattan-style plot for TWAS☆40Updated 4 years ago
- Visualization of Colocalization Between eQTL and GWAS Data☆85Updated 3 years ago
- Repo for the R package coloc☆174Updated last month
- LD Score Regression in R☆49Updated last month
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 7 years ago
- corrplot of LDSC genetic correlation results☆55Updated 3 years ago
- R package for CAUSE☆56Updated last year
- ☆36Updated 4 years ago
- Partners Biobank genomics data QC☆30Updated 5 years ago
- Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform☆69Updated 3 months ago
- Meta-analysis of genomewide association scans☆60Updated last year
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆32Updated 2 months ago
- LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.☆115Updated 2 years ago
- ☆57Updated 8 months ago
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆70Updated 4 years ago
- methods for functional summary-based imputation☆88Updated 3 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆53Updated 4 months ago
- GWAS for survival analysis in large cohorts☆22Updated last year
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆33Updated 3 months ago
- Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.☆90Updated 2 years ago
- GWAS summary statistics files QC tool☆41Updated 8 months ago
- Genotype-based Prediction (GenoPred)☆73Updated this week
- ☆29Updated 3 years ago
- Colocalization analysis of genetic association signals☆54Updated 3 months ago
- Software for estimating correlation of trait effect sizes across populations☆49Updated 3 months ago