astheeggeggs / PHESANT
PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
☆17Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for PHESANT
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆40Updated 3 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆40Updated 6 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆32Updated 4 years ago
- Hypothesis Prioritisation in multi-trait Colocalization☆47Updated 7 months ago
- Regional association plots☆25Updated 7 months ago
- ☆33Updated 3 years ago
- ☆23Updated 3 years ago
- A collection of various utilities for GWAS summary statistics☆26Updated 6 months ago
- GWAS for survival analysis in large cohorts☆19Updated 3 months ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆47Updated last month
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆23Updated 3 years ago
- Partners Biobank genomics data QC☆25Updated 4 years ago
- Colocalization analysis of genetic association signals☆47Updated this week
- Genotype-based Prediction (GenoPred)☆68Updated last week
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- Pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆18Updated this week
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆49Updated last month
- ☆32Updated last year
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆17Updated 2 months ago
- ☆17Updated 8 months ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆27Updated 5 months ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆24Updated 11 months ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆29Updated 10 months ago
- Harmonise GWAS summary statistics against a reference VCF☆40Updated 3 years ago
- Statistical fine-mapping pipeline in FinnGen☆26Updated last week
- R package for CAUSE☆53Updated 10 months ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆27Updated 2 years ago
- corrplot of LDSC genetic correlation results☆46Updated 2 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- Regional association plots☆25Updated 7 months ago