gateswell / SplitBarcodeLinks
MGI sequence platform data multiplexing tool
☆12Updated 5 years ago
Alternatives and similar repositories for SplitBarcode
Users that are interested in SplitBarcode are comparing it to the libraries listed below
Sorting:
- barcode demultiplexing☆21Updated 6 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Fork of the Polysolver project☆31Updated 5 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- ☆13Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- ☆53Updated 2 years ago
- ☆36Updated 2 years ago
- ☆12Updated 8 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 7 months ago
- ENCODE long read RNA-seq pipeline☆48Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- ☆51Updated 5 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆63Updated 10 months ago
- New version of JACUSA -> 2.0☆26Updated last month
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- ☆22Updated 5 months ago
- ☆32Updated 7 years ago
- This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially …☆28Updated 3 months ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆18Updated 2 months ago
- My own tools code for NGS data analysis (Next Generation Sequencing)☆30Updated 5 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆45Updated 2 months ago