idekerlab / cyREST
DEPRECATED. Please visit our new repository (cytoscape/cyREST)
☆27Updated 7 years ago
Alternatives and similar repositories for cyREST:
Users that are interested in cyREST are comparing it to the libraries listed below
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- ☆43Updated 8 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- ☆45Updated 8 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Updated 8 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- A collection of well-known bioinformatics programs.☆25Updated 9 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆69Updated 2 years ago
- Library for manipulating genomic variants and predicting their effects☆83Updated 8 months ago
- This is a beginner's tutorial to Snakemake☆70Updated 8 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated last year
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- Materials for GCB535 at Penn.☆20Updated 5 years ago
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 5 years ago
- GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge☆14Updated 7 years ago
- Reproducible machine learning analysis of gene expression and alternative splicing data☆126Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 3 months ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Updated 2 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 7 years ago
- Response to blog post about Salmon☆37Updated 7 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 8 years ago
- Liability Estimation for Case-Control Studies☆10Updated 4 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 5 years ago
- This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a n…☆31Updated 6 years ago