idekerlab / cyREST
DEPRECATED. Please visit our new repository (cytoscape/cyREST)
☆27Updated 7 years ago
Alternatives and similar repositories for cyREST:
Users that are interested in cyREST are comparing it to the libraries listed below
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Updated 8 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- ☆15Updated 9 years ago
- ☆43Updated 8 years ago
- ☆45Updated 8 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- probability of mendelian error in trios.☆11Updated 9 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated last year
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Updated 8 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Updated 2 years ago
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Updated 9 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Shape analysis of high-throughput data☆19Updated 9 years ago
- Stupid Simple Elastic Compute Cloud☆16Updated last year
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 5 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 3 months ago
- Response to blog post about Salmon☆37Updated 7 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Updated 6 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 8 years ago
- Color DNA/RNA bases in terminal output☆20Updated 7 years ago
- A collection of well-known bioinformatics programs.☆25Updated 9 years ago
- Library for manipulating genomic variants and predicting their effects☆83Updated 8 months ago
- The gkno launcher for executing tools or pipelines☆32Updated 8 years ago
- Tools for munging genomic data☆21Updated 5 years ago