grailbio-publications / Jamshidi_CCGA1LOD_2022

Related projects ⓘ

Alternatives and complementary repositories for Jamshidi_CCGA1LOD_2022

• srbehera / DRAGEN_Analysis
  ☆27Updated 6 months ago
• KCCG / rageseq
  RAGE-seq scripts
  ☆18Updated 3 years ago
• gagneurlab / absplice
  ☆33Updated 2 months ago
• KhiabanianLab / All-FIT
  All-FIT - Allele-Frequency-based Imputation of Tumor Purity
  ☆17Updated 5 years ago
• ylab-hi / ScanNeo
  A pipeline for identifying indel derived neoantigens using RNA-Seq data
  ☆29Updated 2 years ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆26Updated last month
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆38Updated last year
• ChrisMaherLab / INTEGRATE-Vis
  ☆14Updated last year
• XWangLabTHU / DISMIR
  ☆22Updated 2 years ago
• PGDX / cerebro-paper
  ☆23Updated 6 years ago
• cancer-genomics / reproduce_lucas_wflow
  ☆25Updated 8 months ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆49Updated 2 months ago
• adoebley / Griffin
  A flexible framework for nucleosome profiling of cell-free DNA
  ☆26Updated last year
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆38Updated 2 years ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 3 months ago
• ronaldhause / mosaic
  MicrOSAtellite Instability Classifier
  ☆15Updated 6 years ago
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆15Updated 2 months ago
• fanyucai1 / TMB
  肿瘤突变负荷学习笔记（tumor mutation burden）
  ☆16Updated 4 years ago
• gagneurlab / FRASER-analysis
  Accompanying analysis code for the FRASER manuscript
  ☆26Updated 4 years ago
• cfce / chilin
  ChIP-seq DC and QC Pipeline
  ☆34Updated 3 years ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 3 years ago
• getzlab / MutSig2CV
  MutSig2CV from Lawrence et al. 2014
  ☆30Updated 4 years ago
• hliang / cnv-seq
  cnv-seq with custom bugfix
  ☆11Updated 11 years ago
• noamaus / IMPRES-codes
  ☆10Updated 4 years ago
• ChrisMaherLab / INTEGRATE-Neo
  ☆18Updated 6 years ago
• ma-compbio / scGHOST
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
  ☆18Updated 7 months ago
• broadinstitute / RNA_MUTECT_1.0-1
  ☆37Updated 4 years ago
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆26Updated last year
• hart-lab / bagel
  BAGEL software
  ☆26Updated 9 months ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆20Updated last year