DeepRank / deeprank2Links
An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.
☆55Updated 11 months ago
Alternatives and similar repositories for deeprank2
Users that are interested in deeprank2 are comparing it to the libraries listed below
Sorting:
- ☆73Updated 5 years ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- Efficient implementatin of ESM family.☆77Updated 2 months ago
- ☆71Updated last year
- Code for humanization of antibody and nanobody☆65Updated 3 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆89Updated 5 months ago
- Tool for modelling the CDRs of antibodies☆50Updated 2 years ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆86Updated last year
- ☆92Updated last month
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆56Updated 4 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆74Updated last month
- AlphaBind code + model accompanying pre-print☆86Updated 4 months ago
- An antibody-specific language model focusing on NGL prediction☆31Updated last year
- ☆61Updated last year
- ☆39Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- Aligning protein generative models with experimental fitness☆113Updated last month
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆57Updated 6 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆125Updated 2 weeks ago
- ☆114Updated 3 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year
- ☆71Updated 8 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆105Updated last month
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆84Updated last year
- pyFoldX: python bindings for FoldX.☆53Updated 4 years ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- Official repository of EnzymeFlow☆97Updated last year
- Fitness landscapes for antibodies☆91Updated 3 months ago