DeepRank / deeprank2
An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.
☆40Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for deeprank2
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆37Updated 6 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆51Updated last year
- ☆95Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆84Updated 3 months ago
- Official repository of EnzymeFlow☆59Updated last week
- Open source code for AlphaFold.☆37Updated last year
- ☆70Updated 6 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆25Updated 5 months ago
- AlphaFold-initiated replica exchange protein docking☆45Updated 3 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 3 weeks ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆64Updated 2 months ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆31Updated 6 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆33Updated last year
- Tool for modelling the CDRs of antibodies☆45Updated last year
- SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction☆52Updated 3 weeks ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆36Updated 5 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆34Updated 4 months ago
- Structure-conditioned masked language modeling for protein sequence design☆60Updated 9 months ago
- ☆38Updated 2 months ago
- ☆46Updated 9 months ago
- ☆42Updated 4 months ago
- open source code for Tencent tFold☆68Updated 6 months ago
- ☆42Updated last year
- Improved antibody structure-based design using inverse folding☆75Updated 2 months ago
- Python package to atom map, correct and suggest enzymatic reactions☆35Updated 7 months ago
- Structure prediction of alternative protein conformations☆71Updated 2 months ago
- ☆74Updated last month
- ☆94Updated last month
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆52Updated 9 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆26Updated 3 weeks ago