An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.
☆58Mar 12, 2026Updated last month
Alternatives and similar repositories for deeprank2
Users that are interested in deeprank2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆37Jan 15, 2023Updated 3 years ago
- This repository has been integrated in https://github.com/DeepRank/deeprank2☆147Nov 28, 2023Updated 2 years ago
- Metal and Water prediction☆13Feb 5, 2025Updated last year
- Code for ColabDock paper☆153May 1, 2025Updated 11 months ago
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆22Apr 2, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Ligand-binding site classification with deep graph neural networks.☆10Sep 24, 2023Updated 2 years ago
- Graph Network for protein-protein interface including language model features☆34Mar 26, 2024Updated 2 years ago
- A flow matching model for generating conformational ensembles of protein backbones.☆42Jan 7, 2026Updated 3 months ago
- Reaction Analysis through Imaging of Chemical Units☆16Dec 5, 2025Updated 4 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆96Apr 24, 2024Updated last year
- Making Protein Language Modeling Accessible to All Biologists☆159Updated this week
- ☆24Aug 25, 2023Updated 2 years ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆36Nov 18, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- PPI version of Pythia☆32Sep 12, 2025Updated 6 months ago
- ☆26May 19, 2024Updated last year
- Code for humanization of antibody and nanobody☆78Aug 28, 2025Updated 7 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated 2 weeks ago
- ☆62Apr 9, 2024Updated 2 years ago
- Fast and versatile biomolecular structure PDB file parser using SQL queries☆24Mar 17, 2023Updated 3 years ago
- Masif seed paper repository☆173Sep 22, 2025Updated 6 months ago
- Humanness of de-novo designed proteins☆41May 19, 2025Updated 10 months ago
- ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of ant…☆42Nov 8, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆23Jan 15, 2026Updated 2 months ago
- ☆12Dec 2, 2024Updated last year
- ☆32Mar 2, 2026Updated last month
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆53Dec 23, 2025Updated 3 months ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆32Jan 16, 2026Updated 2 months ago
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆149May 29, 2025Updated 10 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆48Nov 4, 2025Updated 5 months ago
- ☆47Sep 16, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆173Feb 6, 2026Updated 2 months ago
- Implementation of AlphaFold 3 in PyTorch Lightning + Hydra☆39Oct 4, 2024Updated last year
- Repo contains source code of the SurfaceID paper☆27Mar 13, 2024Updated 2 years ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆566Dec 12, 2023Updated 2 years ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆38Oct 12, 2022Updated 3 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆46May 22, 2025Updated 10 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆73Jul 2, 2025Updated 9 months ago