MartinThoma / propy3
A Python 3 version of the protein descriptor package propy
☆41Updated 2 years ago
Alternatives and similar repositories for propy3:
Users that are interested in propy3 are comparing it to the libraries listed below
- Bioinformatics and Cheminformatics protocols for peptide analysis☆41Updated 2 years ago
- ☆68Updated 4 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆30Updated last month
- ☆71Updated 7 months ago
- Machine learning models for antibody sequences in PyTorch☆39Updated 3 years ago
- ☆35Updated 2 years ago
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆68Updated 7 months ago
- PyDock Tutorial☆30Updated 6 years ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆36Updated 2 years ago
- Tool for modelling the CDRs of antibodies☆47Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆47Updated 4 months ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆26Updated 2 years ago
- Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction☆34Updated 4 years ago
- Enzyme Activity Prediction of Sequence Variants onNovel Substrates using Improved Substrate Encodings and Convolutional Pooling☆18Updated 2 years ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 2 years ago
- ☆38Updated last year
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated last year
- ☆45Updated last year
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆42Updated last week
- Transformer Based Language Model for Peptide Property Prediction☆44Updated 8 months ago
- pyFoldX: python bindings for FoldX.☆44Updated 3 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆34Updated 3 years ago
- ☆34Updated 3 years ago
- Antibody-Antigen Docking and Affinity Benchmark☆71Updated 4 years ago
- RosettaDesign using PyRosetta☆30Updated 5 years ago
- ☆20Updated 2 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆56Updated last month
- Set of useful HADDOCK utility scripts☆51Updated 7 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆46Updated 4 months ago