Alternatives and similar repositories for Hestia-GOOD

Users that are interested in Hestia-GOOD are comparing it to the libraries listed below

• csi-greifflab / developability_profiling
  ☆23Updated 6 months ago
• gozsari / ProtFeat
  ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.
  ☆20Updated 10 months ago
• 3BioCompBio / RSALOR
  ☆33Updated last month
• barricklab-at-jhu / SVD-of-MSAs
  This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…
  ☆11Updated 11 months ago
• LSSI-ETH / meta-learning-for-protein-engineering
  Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…
  ☆20Updated 11 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆28Updated last year
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 10 months ago
• ddingding / CoVES
  Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)
  ☆11Updated last year
• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆18Updated last week
• IBM / AutoPeptideML
  AutoML system for building trustworthy peptide bioactivity predictors
  ☆31Updated this week
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆29Updated 10 months ago
• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆35Updated 4 years ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆46Updated 2 months ago
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆29Updated 10 months ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated last year
• jsunn-y / DeCOIL
  A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library
  ☆14Updated 4 months ago
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆34Updated 3 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆58Updated 5 months ago
• alicetinglab / ConformationalBiasing
  Code for designing biased protein states
  ☆14Updated 2 weeks ago
• deeprob / pssmpro
  A python tool for numerically encoding protein sequences based on PSSM profile
  ☆13Updated 4 years ago
• DeepGraphLearning / esm-s
  Structure-Informed Protein Language Model
  ☆34Updated last year
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆30Updated last year
• ky66 / ROBIN
  An analysis of a new experimentally-derived nucleic acid binding chemical library
  ☆23Updated 2 years ago
• Marco-Peg / GEP
  ☆15Updated last year
• Shen-Lab / CPAC
  [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction
  ☆15Updated last year
• jsunn-y / CARE
  CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes
  ☆35Updated last month
• HySonLab / LatentDE
  LatentDE: Latent-based Directed Evolution for Protein Sequence Design
  ☆35Updated 3 months ago
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆40Updated last year
• hefeda / PGP
  ☆39Updated last month
• NasimAbdollahi / NodeCoder
  NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
  ☆33Updated last year