NasimAbdollahi / NodeCoderLinks
NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
☆34Updated last year
Alternatives and similar repositories for NodeCoder
Users that are interested in NodeCoder are comparing it to the libraries listed below
Sorting:
- ☆50Updated 11 months ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆28Updated 3 years ago
- dMaSIF implementation for google colab☆36Updated 2 years ago
- Fast and accurate molecular docking with an AI pose scoring function☆42Updated last year
- ☆33Updated last year
- ☆34Updated 2 years ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆43Updated 2 years ago
- Python package to atom map, correct and suggest enzymatic reactions☆40Updated last year
- 🔥 PyTorch implementation of GNINA scoring function for molecular docking☆72Updated 9 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆35Updated 2 years ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆44Updated 3 years ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆70Updated 8 months ago
- Fragment-based Molecular Expansion☆27Updated last year
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆85Updated last month
- ☆54Updated last year
- ☆39Updated last year
- ☆34Updated 2 weeks ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆56Updated last year
- ☆52Updated last week
- ☆27Updated 4 months ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 7 months ago
- Fragment binding prediction with ColabFold☆41Updated last month
- ☆52Updated 3 years ago
- HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer☆30Updated last year
- PocketDTA☆37Updated last month
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆16Updated 2 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 5 months ago
- ☆73Updated last year
- ☆72Updated 9 months ago