NasimAbdollahi / NodeCoderLinks
NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
☆33Updated last year
Alternatives and similar repositories for NodeCoder
Users that are interested in NodeCoder are comparing it to the libraries listed below
Sorting:
- ☆50Updated 9 months ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆28Updated 2 years ago
- dMaSIF implementation for google colab☆34Updated 2 years ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆34Updated last year
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆68Updated 7 months ago
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆44Updated 2 years ago
- ☆34Updated last year
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 5 months ago
- Python package to atom map, correct and suggest enzymatic reactions☆39Updated last year
- HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer☆26Updated last year
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆55Updated 10 months ago
- ☆30Updated 4 months ago
- ☆51Updated 10 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆41Updated 6 months ago
- 🔥 PyTorch implementation of GNINA scoring function for molecular docking☆70Updated 7 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- Fast and accurate molecular docking with an AI pose scoring function☆42Updated last year
- PocketDTA☆30Updated last year
- Code for peptide ligand design with machine learning models.☆28Updated 10 months ago
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆32Updated 3 weeks ago
- ☆33Updated last year
- Repo contains source code of the SurfaceID paper☆25Updated last year
- ☆53Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆56Updated 5 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 3 months ago
- Code for deep learning guided design of dynamic proteins☆31Updated last year
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery☆28Updated 4 years ago
- ☆39Updated last year