Alternatives and similar repositories for GWAS-pipeline:

Users that are interested in GWAS-pipeline are comparing it to the libraries listed below

• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last year
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆64Updated 2 years ago
• stormlovetao / eQTLQC
  ☆26Updated 4 years ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆39Updated 2 years ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆47Updated last month
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆44Updated 2 years ago
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆63Updated this week
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 5 months ago
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆19Updated last year
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆43Updated this week
• hakyimlab / PredictDBPipeline
  ☆15Updated 4 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆34Updated 3 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆79Updated 2 years ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆46Updated last month
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆75Updated last year
• melindacmills / IntroStatisticalGenetics
  GitHub site to accompany Textbook Introduction to Statistical Genetic Data Analysis
  ☆27Updated 5 years ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆45Updated 3 weeks ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆39Updated last year
• genepi-freiburg / gwas
  Scripts for GWAS association and metaanalysis
  ☆43Updated 4 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆57Updated 5 months ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆57Updated 5 years ago
• xihaoli / STAARpipeline-Tutorial
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆28Updated 3 months ago
• gabraham / plink2R
  Read PLINK BED/BIM/FAM files into R
  ☆40Updated 3 years ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆72Updated last week
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• freeseek / gwaspipeline
  ☆40Updated 7 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 4 months ago
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆36Updated last week