This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.
☆43May 18, 2022Updated 4 years ago
Alternatives and similar repositories for GWAS-pipeline
Users that are interested in GWAS-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Sep 7, 2022Updated 3 years ago
- https://filippob.github.io/introduction_to_gwas/☆22Jun 8, 2026Updated 3 weeks ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆14Mar 14, 2019Updated 7 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 5 months ago
- Bioinformatics Pipeline☆12Oct 7, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆30Aug 2, 2022Updated 3 years ago
- A tool to plot significant regions of GWAS☆29Jan 27, 2023Updated 3 years ago
- Create LocusZoom-style plots in R.☆22Mar 5, 2023Updated 3 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- RNA-seq analysis scripts☆18Jan 8, 2026Updated 5 months ago
- Codebook from my GWAS cookbook☆196May 26, 2022Updated 4 years ago
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- A MatchMaker Exchange server☆12Jun 1, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Perform GWAS using the FarmCPU model.☆26Dec 14, 2024Updated last year
- ☆14Apr 14, 2026Updated 2 months ago
- Genome-wide Association Study (GWAS) Tutorial☆41Apr 12, 2019Updated 7 years ago
- GWAS summary statistics files QC tool☆42Dec 24, 2024Updated last year
- Proteome-Wide Association Study☆51Apr 4, 2021Updated 5 years ago
- Instructions and helpful R code for Running GEMMA and GAPIT☆13Sep 14, 2017Updated 8 years ago
- Introductory workshop teaching python for Data Science and Biomedical Machine Learning☆12May 13, 2022Updated 4 years ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 2 years ago
- Easily download publicly available GWAS summary statistics.☆79Dec 3, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆56Jan 16, 2025Updated last year
- SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.☆40Apr 5, 2019Updated 7 years ago
- From QC to summary statistics☆17Jun 27, 2020Updated 6 years ago
- RSG Turkey Student Symposium 2020 - Workshop Session☆13Dec 17, 2020Updated 5 years ago
- Genome-wide association studies (GWAS) for ordered categorical phenotypes☆23Updated this week
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆17Apr 8, 2021Updated 5 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆43May 2, 2018Updated 8 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- Find causal cell-types underlying complex trait genetics☆96Feb 8, 2026Updated 4 months ago
- R package to perform Bayesian Genome-Wide Association Studies☆40Oct 10, 2023Updated 2 years ago
- ☆10Feb 25, 2024Updated 2 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 10 months ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Oct 14, 2017Updated 8 years ago
- Code and data related to the meta-analysis of fat distribution in UK Biobank and GIANT☆22Dec 5, 2018Updated 7 years ago