Alternatives and similar repositories for tools-devteam

Users that are interested in tools-devteam are comparing it to the libraries listed below

• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆40Updated 4 years ago
• ewels / nf-core-rnaseq
  See the main fork of this repository here >>>
  ☆38Updated last month
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆88Updated 6 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆75Updated this week
• relipmoc / skewer
  ☆94Updated 2 years ago
• usegalaxy-eu / usegalaxy-eu-tools
  List of tools included in https://usegalaxy.eu
  ☆32Updated this week
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 9 years ago
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 6 years ago
• nellore / rail
  Scalable RNA-seq analysis
  ☆73Updated 4 years ago
• GenomiqueENS / dockerfiles
  ☆82Updated 3 years ago
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆83Updated last week
• chanzuckerberg / idseq-workflows
  Portable WDL workflows for IDseq production pipelines
  ☆32Updated 3 years ago
• galaxyproject / admin-training
  Galaxy Admin Training
  ☆61Updated 6 months ago
• MultiQC / test-data
  Test data for MultiQC.
  ☆22Updated 3 weeks ago
• arq5x / bedtools-protocols
  ☆78Updated 11 years ago
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated 3 weeks ago
• h3abionet / h3agatk
  ☆21Updated 4 years ago
• alesssia / YAMP
  YAMP: Yet Another Metagenomic Pipeline
  ☆59Updated 2 years ago
• gatk-workflows / gatk3-4-rnaseq-germline-snps-indels
  Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools
  ☆51Updated 5 years ago
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆26Updated 3 weeks ago
• frankMusacchia / Annocript
  Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …
  ☆55Updated 5 years ago
• guigolab / grape-nf
  An automated RNA-seq pipeline using Nextflow
  ☆37Updated 9 months ago
• sequencing / NxTrim
  Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
  ☆54Updated 7 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated last month
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆47Updated 4 months ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆86Updated last year
• vplagnol / ExomeDepth
  ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.
  ☆70Updated 3 weeks ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago